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    LOC9270353 5-oxoprolinase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270353, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9270353
    Gene description
    5-oxoprolinase
    Locus tag
    OSNPB_010966000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 29.3), leaves before flowering (RPKM 24.3) and 6 other tissues See more
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    Genomic context

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    See LOC9270353 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42590880..42598031, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324468 Neighboring gene uncharacterized LOC4324469 Neighboring gene ABC transporter D family member 1 Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5-oxoprolinase (ATP-hydrolyzing) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    5-oxoprolinase
    Names
    Os01g0966000
    P0458E05.23-1
    P0458E05.23-2
    putative 5-oxoprolinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      42590880..42598031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794771.2 → XP_015650257.1  5-oxoprolinase

      UniProtKB/TrEMBL
      A0A0P0VDA2, A0A979HL75, A3A1V4, Q8LHD1
      Conserved Domains (4) summary
      PLN02666
      Location:3 → 1257
      PLN02666; 5-oxoprolinase
      pfam01968
      Location:234 → 533
      Hydantoinase_A; Hydantoinase/oxoprolinase
      pfam02538
      Location:733 → 1257
      Hydantoinase_B; Hydantoinase B/oxoprolinase
      pfam05378
      Location:8 → 215
      Hydant_A_N; Hydantoinase/oxoprolinase N-terminal region

    2. XM_015794755.2 → XP_015650241.1  5-oxoprolinase

      UniProtKB/TrEMBL
      A0A0P0VDA2, A0A979HL75, A3A1V4, Q8LHD1
      Conserved Domains (4) summary
      PLN02666
      Location:3 → 1257
      PLN02666; 5-oxoprolinase
      pfam01968
      Location:234 → 533
      Hydantoinase_A; Hydantoinase/oxoprolinase
      pfam02538
      Location:733 → 1257
      Hydantoinase_B; Hydantoinase B/oxoprolinase
      pfam05378
      Location:8 → 215
      Hydant_A_N; Hydantoinase/oxoprolinase N-terminal region

    3. XM_015794746.2 → XP_015650232.1  5-oxoprolinase

      UniProtKB/TrEMBL
      A0A0P0VDA2, A0A979HL75, A3A1V4, Q8LHD1
      Conserved Domains (4) summary
      PLN02666
      Location:3 → 1257
      PLN02666; 5-oxoprolinase
      pfam01968
      Location:234 → 533
      Hydantoinase_A; Hydantoinase/oxoprolinase
      pfam02538
      Location:733 → 1257
      Hydantoinase_B; Hydantoinase B/oxoprolinase
      pfam05378
      Location:8 → 215
      Hydant_A_N; Hydantoinase/oxoprolinase N-terminal region
    Nucleotide Protein
    Heading Accession and Version

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