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    LOC4345406 uncharacterized LOC4345406 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345406, updated on 19-Aug-2022

    Summary

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    Gene symbol
    LOC4345406
    Gene description
    uncharacterized LOC4345406
    Locus tag
    OSNPB_080371200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1770_H03.44
    Expression
    Biased expression in flower buds (RPKM 5.8), leaves after flowering (RPKM 1.2) and 2 other tissues See more
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    Genomic context

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    See LOC4345406 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (17299298..17323272, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene iron-sulfur assembly protein IscA-like 2, mitochondrial Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase Neighboring gene carotenoid 9,10(9',10')-cleavage dioxygenase 1 Neighboring gene disease resistance protein PIK6-NP-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345406
    Names
    Os08g0371200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17299298..17323272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793540.2 → XP_015649026.1  uncharacterized protein LOC4345406 isoform X3

      Conserved Domains (2) summary
      COG3416
      Location:49 → 144
      COG3416; Uncharacterized protein [Function unknown]
      cl10080
      Location:95 → 130
      RPE65; Retinal pigment epithelial membrane protein

    2. XM_015793541.2 → XP_015649027.1  uncharacterized protein LOC4345406 isoform X4

      UniProtKB/TrEMBL
      A0A0P0XEX6, Q6Z2Q8
      Conserved Domains (1) summary
      cl10080
      Location:92 → 127
      RPE65; Retinal pigment epithelial membrane protein

    3. XM_015793542.2 → XP_015649028.1  uncharacterized protein LOC4345406 isoform X5

      Conserved Domains (1) summary
      cl10080
      Location:95 → 132
      RPE65; Retinal pigment epithelial membrane protein

    4. XM_015793538.2 → XP_015649024.1  uncharacterized protein LOC4345406 isoform X1

      Conserved Domains (1) summary
      cl10080
      Location:95 → 129
      RPE65; Retinal pigment epithelial membrane protein

    5. XM_015793539.2 → XP_015649025.1  uncharacterized protein LOC4345406 isoform X2

      Conserved Domains (1) summary
      cl10080
      Location:92 → 126
      RPE65; Retinal pigment epithelial membrane protein

    RNA

    1. XR_003243685.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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