Kctd4 potassium channel tetramerization domain containing 4 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Kctd4provided by RGD
Official Full Name: potassium channel tetramerization domain containing 4provided by RGD
Primary source: RGD:1594637
See related: Ensembl:ENSRNOG00000050996 AllianceGenome:RGD:1594637
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be involved in protein homooligomerization. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 40.2), Thymus (RPKM 32.2) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 15q11

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	15	NC_086033.1 (57675024..57686816)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	15	NC_051350.1 (51263664..51278030)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	15	NC_005114.4 (58006288..58021166)

Chromosome 15 - NC_086033.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in protein homooligomerization	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: BTB/POZ domain-containing protein KCTD4

Names: potassium channel tetramerisation domain containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001109650.1 → NP_001103120.1 BTB/POZ domain-containing protein KCTD4

See identical proteins and their annotated locations for NP_001103120.1

Status: PROVISIONAL

Source sequence(s)

CH473951

UniProtKB/TrEMBL

A6HTU4, D3ZXL9

Related

ENSRNOP00000065668.1, ENSRNOT00000075786.2

Conserved Domains (1) summary

cd18364
Location:34 → 119

BTB_POZ_KCTD4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 4 (KCTD4)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086033.1 Reference GRCr8

Range

57675024..57686816

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006252330.4 → XP_006252392.1 BTB/POZ domain-containing protein KCTD4 isoform X1

See identical proteins and their annotated locations for XP_006252392.1

UniProtKB/TrEMBL

A6HTU4, D3ZXL9

Conserved Domains (1) summary

cd18364
Location:34 → 119

BTB_POZ_KCTD4; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium channel tetramerization domain-containing protein 4 (KCTD4)