Troap trophinin associated protein [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Troapprovided by RGD
Official Full Name: trophinin associated proteinprovided by RGD
Primary source: RGD:1306870
See related: Ensembl:ENSRNOG00000060703 AllianceGenome:RGD:1306870
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human TROAP (trophinin associated protein). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Thymus (RPKM 52.4), Spleen (RPKM 32.5) and 8 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q36

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (132111892..132121296)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (130233534..130242369)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (140758576..140766423)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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General protein information

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Preferred Names: tastin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001271243.1 → NP_001258172.1 tastin

See identical proteins and their annotated locations for NP_001258172.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000007

UniProtKB/TrEMBL

A6KCD9, D3ZLZ9

Related

ENSRNOP00000071862.1, ENSRNOT00000089448.2

Conserved Domains (1) summary

PHA03247
Location:430 → 638

PHA03247; large tegument protein UL36; Provisional

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

132111892..132121296

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_006257348.5 → XP_006257410.1 tastin isoform X1

UniProtKB/TrEMBL

A0A8I6ARF8

Related

ENSRNOP00000097449.1

Conserved Domains (1) summary

PHA03247
Location:200 → 592

PHA03247; large tegument protein UL36; Provisional
XM_039078927.2 → XP_038934855.1 tastin isoform X2

Conserved Domains (1) summary

PHA03247
Location:93 → 392

PHA03247; large tegument protein UL36; Provisional