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    Crxos1 Crx opposite strand transcript 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292625, updated on 29-Feb-2024

    Summary

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    Official Symbol
    Crxos1provided by RGD
    Official Full Name
    Crx opposite strand transcript 1provided by RGD
    Primary source
    RGD:1565487
    See related
    Ensembl:ENSRNOG00000038251 AllianceGenome:RGD:1565487
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565487; AABR07002623.1
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Crxos1 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (85705982..85708806)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (76577827..76580677)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (77514321..77516735)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L23a, pseudogene 5 Neighboring gene cone-rod homeobox Neighboring gene uncharacterized LOC134484887 Neighboring gene argininosuccinate synthase 1, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Crx opposite strand transcript 1; cone-rod homeobox protein
    Names
    cone-rod homeobox protein-like
    homeobox protein goosecoid-2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      85705982..85708806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006228355.5 → XP_006228417.2  cone-rod homeobox protein

      See identical proteins and their annotated locations for XP_006228417.2

      UniProtKB/TrEMBL
      D3Z8J8
      Related
      ENSRNOP00000055029.4
      Conserved Domains (1) summary
      pfam00046
      Location:18 → 61
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

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