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    Hhipl1 HHIP-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362781, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Hhipl1provided by RGD
    Official Full Name
    HHIP-like 1provided by RGD
    Primary source
    RGD:1311698
    See related
    Ensembl:ENSRNOG00000028390 AllianceGenome:RGD:1311698
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311698
    Summary
    Predicted to enable catalytic activity and scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in membrane. Orthologous to human HHIPL1 (HHIP like 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 23.8), Adrenal (RPKM 17.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Hhipl1 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (132984028..133008248)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (127219616..127243839)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (132218583..132242852)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103617 Neighboring gene coiled-coil domain containing 85C Neighboring gene uncharacterized LOC120103618 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1 Neighboring gene uncharacterized LOC120103619 Neighboring gene EMAP like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    HHIP-like protein 1
    Names
    hedgehog interacting protein-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      132984028..133008248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_343107.10 → XP_343108.4  HHIP-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_343108.4

      UniProtKB/TrEMBL
      A6KBF8, D4A9N1
      Related
      ENSRNOP00000038254.4
      Conserved Domains (4) summary
      smart00202
      Location:682 → 785
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:581 → 704
      PHA03378; EBNA-3B; Provisional
      pfam03024
      Location:42 → 189
      Folate_rec; Folate receptor family
      cl26817
      Location:199 → 445
      GSDH; Glucose / Sorbosone dehydrogenase

    2. XM_063262802.1 → XP_063118872.1  HHIP-like protein 1 isoform X3

    3. XM_039113375.2 → XP_038969303.1  HHIP-like protein 1 isoform X4

      Conserved Domains (3) summary
      smart00202
      Location:342 → 445
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:241 → 364
      PHA03378; EBNA-3B; Provisional
      cl26817
      Location:3 → 105
      GSDH; Glucose / Sorbosone dehydrogenase

    4. XM_039113374.2 → XP_038969302.1  HHIP-like protein 1 isoform X2

      Conserved Domains (3) summary
      smart00202
      Location:408 → 511
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:307 → 430
      PHA03378; EBNA-3B; Provisional
      cl26817
      Location:28 → 171
      GSDH; Glucose / Sorbosone dehydrogenase
    Nucleotide Protein Strain
    Heading Accession and Version

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