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    Fam228b family with sequence similarity 228, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363146, updated on 6-Jun-2024

    Summary

    Official Symbol
    Fam228bprovided by RGD
    Official Full Name
    family with sequence similarity 228, member Bprovided by RGD
    Primary source
    RGD:2324744
    See related
    Ensembl:ENSRNOG00000049615 AllianceGenome:RGD:2324744
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM228B (family with sequence similarity 228 member B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 42.1), Kidney (RPKM 17.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Fam228b in Genome Data Viewer
    Location:
    6q14
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (33473949..33505833, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (27754505..27786578, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (30037995..30070395)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene intersectin 2 Neighboring gene ribosomal protein L29, pseudogene 6 Neighboring gene family with sequence similarity 228, member A Neighboring gene uncharacterized LOC134479113 Neighboring gene profilin family, member 4 Neighboring gene tumor protein p53 inducible protein 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419693.1NP_001406622.1  protein FAM228B

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A0A8I6AEM4, M0R8F7
      Related
      ENSRNOP00000091958.1, ENSRNOT00000114842.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      33473949..33505833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261377.1XP_063117447.1  protein FAM228B isoform X6

    2. XM_063261378.1XP_063117448.1  protein FAM228B isoform X7

    3. XM_008764566.4XP_008762788.2  protein FAM228B isoform X5

      UniProtKB/TrEMBL
      M0R8F7
      Related
      ENSRNOP00000065753.2
    4. XM_008764562.4XP_008762784.2  protein FAM228B isoform X1

      UniProtKB/TrEMBL
      M0R8F7
    5. XM_008764561.4XP_008762783.2  protein FAM228B isoform X1

      UniProtKB/TrEMBL
      M0R8F7
    6. XM_008764565.4XP_008762787.2  protein FAM228B isoform X4

      UniProtKB/TrEMBL
      M0R8F7
      Related
      ENSRNOP00000084574.1
    7. XM_063261376.1XP_063117446.1  protein FAM228B isoform X3

      UniProtKB/TrEMBL
      A0A8I6GC04
    8. XM_063261375.1XP_063117445.1  protein FAM228B isoform X2

      UniProtKB/TrEMBL
      A0A8I6AEM4, M0R8F7

    RNA

    1. XR_010052049.1 RNA Sequence

    2. XR_005505743.2 RNA Sequence

    3. XR_005505744.2 RNA Sequence

    4. XR_010052050.1 RNA Sequence

    5. XR_010052048.1 RNA Sequence

    6. XR_010052047.1 RNA Sequence

    7. XR_592927.4 RNA Sequence

    8. XR_010052045.1 RNA Sequence

    9. XR_010052044.1 RNA Sequence

    10. XR_005505741.2 RNA Sequence

    11. XR_010052046.1 RNA Sequence

    12. XR_005505740.2 RNA Sequence

    13. XR_005505745.2 RNA Sequence