Glra2 glycine receptor, alpha 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Glra2provided by RGD
Full Name: glycine receptor, alpha 2provided by RGD
Primary source: RGD:2705
See related: Ensembl:ENSRNOG00000003313 AllianceGenome:RGD:2705
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RNNEOGLY
Summary: Predicted to enable glycine-gated chloride ion channel activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to contribute to extracellularly glycine-gated chloride channel activity and glycine binding activity. Involved in spinal cord development and synapse assembly. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be part of chloride channel complex. Predicted to be active in glycinergic synapse and neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human GLRA2 (glycine receptor alpha 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward (RPKM 36.0) See more
Orthologs: human mouse all
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Genomic context

Location:: Xq14

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	X	NC_086039.1 (32651931..32873277)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	X	NC_051356.1 (29020377..29241666)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	X	NC_005120.4 (30612894..30832078, complement)

Chromosome X - NC_086039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

data show that the current-voltage relationships of homomeric channels formed by the alpha2 or alpha3 subunits change upon receptor desensitization from a linear to an inwardly rectifying shape, in contrast to their heteromeric counterparts.
Title: Electrophysiological Signature of Homomeric and Heteromeric Glycine Receptor Channels.
alpha2 subunits determine the picrotin sensitivity of alpha1alpha2-heteromeric receptors. Direct gating of the alpha2 subunit is not required for this picrotin inhibition.
Title: Gating effects on picrotin block of glycine receptors.
This study demonistrated that glycine receptor alpha 2 subunit decrease in developmental brain.
Title: Changes in glycine receptor subunit expression in forebrain regions of the Wistar rat over development.
The immunohistochemistry indicated a strong Glycine receptor alpha2 signal in the Purkinje cells, internal and external granular layers.
Title: Developmental expression of glycine receptor subunits in rat cerebellum.
Role of Nova-1 in regulating alpha2N, a novel glycine receptor splice variant, in developing spinal cord neurons.
Title: Role of Nova-1 in regulating alpha2N, a novel glycine receptor splice variant, in developing spinal cord neurons.

Submit: New GeneRIF Correction

General gene information

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Markers

D5S648 (e-PCR), detects polymorphism
- UniSTS:13873

GLRA2 (e-PCR)
- UniSTS:506517

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
contributes_to chloride channel activity	IBA Inferred from Biological aspect of Ancestor more info
enables chloride channel activity	IEA Inferred from Electronic Annotation more info
enables excitatory extracellular ligand-gated monoatomic ion channel activity	IBA Inferred from Biological aspect of Ancestor more info
enables extracellularly glycine-gated chloride channel activity	IEA Inferred from Electronic Annotation more info
enables extracellularly glycine-gated chloride channel activity	ISO Inferred from Sequence Orthology more info
enables extracellularly glycine-gated chloride channel activity	TAS Traceable Author Statement more info	PubMed
enables glycine binding	IEA Inferred from Electronic Annotation more info
enables glycine binding	ISO Inferred from Sequence Orthology more info
enables glycine-gated chloride ion channel activity	IEA Inferred from Electronic Annotation more info
enables glycine-gated chloride ion channel activity	ISO Inferred from Sequence Orthology more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables neurotransmitter receptor activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane signaling receptor activity	IEA Inferred from Electronic Annotation more info
enables transmitter-gated monoatomic ion channel activity	IEA Inferred from Electronic Annotation more info
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	IEA Inferred from Electronic Annotation more info
enables transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in cellular response to amino acid stimulus	IEA Inferred from Electronic Annotation more info
involved_in cellular response to amino acid stimulus	ISO Inferred from Sequence Orthology more info
involved_in cellular response to ethanol	IEA Inferred from Electronic Annotation more info
involved_in cellular response to ethanol	ISO Inferred from Sequence Orthology more info
involved_in cellular response to zinc ion	IEA Inferred from Electronic Annotation more info
involved_in cellular response to zinc ion	ISO Inferred from Sequence Orthology more info
involved_in chemical synaptic transmission	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within chemical synaptic transmission	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within chemical synaptic transmission, postsynaptic	ISO Inferred from Sequence Orthology more info
involved_in chloride transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in chloride transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in chloride transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in excitatory postsynaptic potential	IEA Inferred from Electronic Annotation more info
involved_in modulation of chemical synaptic transmission	ISO Inferred from Sequence Orthology more info
acts_upstream_of_or_within monoatomic ion transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in monoatomic ion transmembrane transport	ISO Inferred from Sequence Orthology more info
involved_in neuropeptide signaling pathway	IEA Inferred from Electronic Annotation more info
involved_in neuropeptide signaling pathway	ISO Inferred from Sequence Orthology more info
involved_in regulation of membrane potential	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of postsynaptic membrane potential	ISO Inferred from Sequence Orthology more info
involved_in spinal cord development	IEP Inferred from Expression Pattern more info	PubMed
involved_in synapse assembly	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
is_active_in GABA-ergic synapse	ISO Inferred from Sequence Orthology more info
located_in cell projection	IEA Inferred from Electronic Annotation more info
part_of chloride channel complex	IEA Inferred from Electronic Annotation more info
located_in glycinergic synapse	IEA Inferred from Electronic Annotation more info
is_active_in glycinergic synapse	ISO Inferred from Sequence Orthology more info
located_in intracellular membrane-bounded organelle	IEA Inferred from Electronic Annotation more info
located_in intracellular membrane-bounded organelle	ISO Inferred from Sequence Orthology more info
is_active_in neuron projection	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info
located_in postsynaptic membrane	IEA Inferred from Electronic Annotation more info
is_active_in postsynaptic specialization membrane	ISO Inferred from Sequence Orthology more info
is_active_in synapse	IBA Inferred from Biological aspect of Ancestor more info
part_of transmembrane transporter complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: glycine receptor subunit alpha-2

Names: Glycine receptor alpha 2 subunit (glycine receptor, neonatal); glycine receptor strychnine-binding subunit; glycine receptor subunit alpha-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_012568.5 → NP_036700.1 glycine receptor subunit alpha-2 precursor

See identical proteins and their annotated locations for NP_036700.1

Status: VALIDATED

Source sequence(s)

JAXUCZ010000021

UniProtKB/Swiss-Prot

P22771, Q91W28

UniProtKB/TrEMBL

A0A0G2JSH7, A6K2J6

Related

ENSRNOP00000004443.4, ENSRNOT00000004443.7

Conserved Domains (1) summary

TIGR00860
Location:46 → 441

LIC; Cation transporter family protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086039.1 Reference GRCr8

Range

32651931..32873277

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_003752039.6 → XP_003752087.1 glycine receptor subunit alpha-2 isoform X1

See identical proteins and their annotated locations for XP_003752087.1

UniProtKB/Swiss-Prot

P22771, Q91W28

UniProtKB/TrEMBL

A0A0G2JSH7, A6K2J6

Conserved Domains (1) summary

TIGR00860
Location:46 → 441

LIC; Cation transporter family protein
XM_008773152.4 → XP_008771374.1 glycine receptor subunit alpha-2 isoform X2

See identical proteins and their annotated locations for XP_008771374.1

UniProtKB/Swiss-Prot

P22771, Q91W28

UniProtKB/TrEMBL

A0A8I6GJI2

Related

ENSRNOP00000091317.1

Conserved Domains (1) summary

TIGR00860
Location:46 → 441

LIC; Cation transporter family protein
XM_039099446.2 → XP_038955374.1 glycine receptor subunit alpha-2 isoform X3

UniProtKB/TrEMBL

A0A8I5ZW10

Conserved Domains (1) summary

TIGR00860
Location:11 → 361

LIC; Cation transporter family protein