Tchhl1 trichohyalin-like 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Tchhl1provided by MGI
Official Full Name: trichohyalin-like 1provided by MGI
Primary source: MGI:MGI:1918575
See related: Ensembl:ENSMUSG00000027908 AllianceGenome:MGI:1918575
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Thhl1; S100a17; 5430400H23Rik
Summary: Predicted to enable calcium ion binding activity and transition metal ion binding activity. Orthologous to human TCHHL1 (trichohyalin like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Low expression observed in reference dataset See more
Orthologs: human all
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Genomic context

Location:: 3 F2.1; 3 40.51 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	3	NC_000069.7 (93376061..93379287)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	3	NC_000069.6 (93468754..93471980)

Chromosome 3 - NC_000069.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (4)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info
enables molecular_function	ND No biological Data available more info
enables transition metal ion binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: trichohyalin-like protein 1

Names: S100 calcium binding protein A17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_027762.3 → NP_082038.2 trichohyalin-like protein 1

See identical proteins and their annotated locations for NP_082038.2

Status: VALIDATED

Source sequence(s)

AA500450, AA856087, AK017244

Consensus CDS

CCDS17582.1

UniProtKB/Swiss-Prot

F8VQ46, Q9D3P1

Related

ENSMUSP00000029516.3, ENSMUST00000029516.3

Conserved Domains (2) summary

cd00213
Location:2 → 86

S-100; S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 ...

pfam13499
Location:13 → 75

EF-hand_7; EF-hand domain pair