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    TSEN54 tRNA splicing endonuclease subunit 54 [ Gallus gallus (chicken) ]

    Gene ID: 422126, updated on 5-Mar-2024

    Summary

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    Symbol
    TSEN54provided by CGNC
    Full Name
    tRNA splicing endonuclease subunit 54provided by CGNC
    Primary source
    CGNC:6085
    See related
    Ensembl:ENSGALG00010029725
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    See TSEN54 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 18 NC_052549.1 (11517234..11526174)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 18 NC_052590.1 (11117721..11126660)

    Chromosome 18 - NC_052549.1Genomic Context describing neighboring genes Neighboring gene growth factor receptor bound protein 2 Neighboring gene transmembrane protein 94 Neighboring gene CASK interacting protein 2 Neighboring gene melanin-concentrating hormone receptor 1 Neighboring gene LLGL2, scribble cell polarity complex component Neighboring gene uncharacterized LOC121107176 Neighboring gene uncharacterized LOC121107174

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in tRNA-type intron splice site recognition and cleavage IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of tRNA-intron endonuclease complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tRNA-splicing endonuclease subunit Sen54
    Names
    TSEN54 tRNA splicing endonuclease subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052549.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      11517234..11526174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_420129.8 → XP_420129.3  tRNA-splicing endonuclease subunit Sen54

      UniProtKB/TrEMBL
      A0A8V1AEY4, A0A8V1ALX5
      Related
      ENSGALP00010044593.1, ENSGALT00010071903.1
      Conserved Domains (1) summary
      TIGR00324
      Location:93 → 149
      endA; tRNA-intron lyase

    RNA

    1. XR_213375.5 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052590.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      11117721..11126660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040686804.2 → XP_040542738.1  tRNA-splicing endonuclease subunit Sen54

      UniProtKB/TrEMBL
      A0A8V1AEY4, A0A8V1ALX5
      Conserved Domains (1) summary
      TIGR00324
      Location:93 → 149
      endA; tRNA-intron lyase

    RNA

    1. XR_005854849.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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