U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COL4A5 collagen type IV alpha 5 chain [ Gallus gallus (chicken) ]

    Gene ID: 422348, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    COL4A5provided by CGNC
    Official Full Name
    collagen type IV alpha 5 chainprovided by CGNC
    Primary source
    CGNC:6170
    See related
    Ensembl:ENSGALG00010015632
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL4A5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    54
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (13859833..13939361, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (13892142..13971710, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC124417955 Neighboring gene insulin receptor substrate 4 Neighboring gene collagen type IV alpha 6 chain Neighboring gene autophagy related 4A cysteine peptidase Neighboring gene proteasome 26S subunit, non-ATPase 10

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-5(IV) chain
    Names
    collagen, type IV, alpha 5 (Alport syndrome)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      13859833..13939361 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015278607.4 → XP_015134093.2  collagen alpha-5(IV) chain isoform X3

      UniProtKB/TrEMBL
      A0A8V0YLH1
      Related
      ENSGALP00010021803.1, ENSGALT00010037746.1
      Conserved Domains (1) summary
      smart00111
      Location:1575 → 1687
      C4; C-terminal tandem repeated domain in type 4 procollagens

    2. XM_015278606.4 → XP_015134092.2  collagen alpha-5(IV) chain isoform X2

      UniProtKB/TrEMBL
      A0A8V0YZJ2
      Related
      ENSGALP00010021769.1, ENSGALT00010037667.1
      Conserved Domains (1) summary
      smart00111
      Location:1578 → 1690
      C4; C-terminal tandem repeated domain in type 4 procollagens

    3. XM_015278605.4 → XP_015134091.2  collagen alpha-5(IV) chain isoform X1

      UniProtKB/TrEMBL
      A0A8V0YLG2
      Related
      ENSGALP00010021793.1, ENSGALT00010037726.1
      Conserved Domains (1) summary
      smart00111
      Location:1581 → 1693
      C4; C-terminal tandem repeated domain in type 4 procollagens

    RNA

    1. XR_005859823.2 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      13892142..13971710 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670591.2 → XP_040526525.1  collagen alpha-5(IV) chain isoform X3

      Conserved Domains (1) summary
      smart00111
      Location:1580 → 1692
      C4; C-terminal tandem repeated domain in type 4 procollagens

    2. XM_040670590.2 → XP_040526524.1  collagen alpha-5(IV) chain isoform X2

      Conserved Domains (1) summary
      smart00111
      Location:1583 → 1695
      C4; C-terminal tandem repeated domain in type 4 procollagens

    3. XM_040670588.2 → XP_040526522.1  collagen alpha-5(IV) chain isoform X1

      Conserved Domains (1) summary
      smart00111
      Location:1586 → 1698
      C4; C-terminal tandem repeated domain in type 4 procollagens

    RNA

    1. XR_005849463.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials