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    CG5515 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 42875, updated on 10-May-2024

    Summary

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    Official Symbol
    CG5515provided by FlyBase
    Primary source
    FLYBASE:FBgn0039163
    Locus tag
    Dmel_CG5515
    See related
    AllianceGenome:FB:FBgn0039163
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG5515
    Summary
    Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG5515 in Genome Data Viewer
    Location:
    95E8-95E8; 3-83 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (24187724..24188896, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (20013446..20014618, complement)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Adenomatous polyposis coli 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene morgana Neighboring gene Structural maintenance of chromosomes 6 Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. Dunn JG, et al. Elife, 2013 Dec 3. PMID 24302569, Free PMC Article
    2. Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes. Phanse S, et al. Data Brief, 2016 Mar. PMID 26870755, Free PMC Article
    3. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
    4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
    5. A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function. Neely GG, et al. Cell, 2010 Apr 2. PMID 20371351, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG5515-PA
    CG5515-PB
    CG5515-PC
    CG5515-PD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      24187724..24188896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001275972.1 → NP_001262901.1  uncharacterized protein Dmel_CG5515, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001262901.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    2. NM_176554.2 → NP_788731.1  uncharacterized protein Dmel_CG5515, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_788731.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Related
      FBpp0083960
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    3. NM_142970.3 → NP_651227.2  uncharacterized protein Dmel_CG5515, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_651227.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Related
      FBpp0083959
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46

    4. NM_001300570.1 → NP_001287499.1  uncharacterized protein Dmel_CG5515, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287499.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q95RT3, Q9VCB9
      Conserved Domains (2) summary
      pfam05773
      Location:4 → 116
      RWD; RWD domain
      pfam16543
      Location:149 → 198
      DFRP_C; DRG Family Regulatory Proteins, Tma46
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95RT3 Q95RT3
    Q9VCB9 Q9VCB9

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