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    LOC4326694 cytochrome P450 72A13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326694, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4326694
    Gene description
    cytochrome P450 72A13
    Locus tag
    OSNPB_010627400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 8.2), flower buds (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4326694 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25040106..25044023)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene probable carboxylesterase 2 Neighboring gene transcription factor bHLH144 Neighboring gene cytochrome P450 72A15 Neighboring gene cytochrome P450 72A14-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 72A13
    Names
    Os01g0627400
    P0006C01.32
    P0688A04.10
    cytochrome P450-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25040106..25044023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760399.2 → XP_015615885.1  cytochrome P450 72A13 isoform X2

      UniProtKB/TrEMBL
      B8ABZ9, B9EY58
      Conserved Domains (1) summary
      cl41757
      Location:108 → 542
      cytochrome_P450; cytochrome P450 (CYP) superfamily

    2. XM_015760407.2 → XP_015615893.1  cytochrome P450 72A13 isoform X2

      UniProtKB/TrEMBL
      B8ABZ9, B9EY58
      Conserved Domains (1) summary
      cl41757
      Location:108 → 542
      cytochrome_P450; cytochrome P450 (CYP) superfamily

    3. XM_015760392.2 → XP_015615878.1  cytochrome P450 72A13 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V5H0, B8ABZ9, Q5ZE54, Q5ZEB4
      Conserved Domains (1) summary
      cl12078
      Location:59 → 554
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

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