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    LOC4326692 transcription factor bHLH144 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326692, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4326692
    Gene description
    transcription factor bHLH144
    Locus tag
    OSNPB_010626900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0688A04.7
    Expression
    Broad expression in roots before flowering (RPKM 99.2), roots after flowering (RPKM 43.0) and 6 other tissues See more
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    Genomic context

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    See LOC4326692 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25029827..25033293, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326691 Neighboring gene probable carboxylesterase 2 Neighboring gene cytochrome P450 72A13 Neighboring gene cytochrome P450 72A15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH144
    Names
    Os01g0626900
    P0006C01.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      25029827..25033293 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765872.2 → XP_015621358.1  transcription factor bHLH144

      UniProtKB/TrEMBL
      A0A0N7KDC8, A0A8J8Y821, A2WST9, A2ZVL2, Q5ZE55
      Conserved Domains (1) summary
      cl00081
      Location:189 → 239
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    2. XM_015765873.2 → XP_015621359.1  transcription factor bHLH144

      UniProtKB/TrEMBL
      A0A0N7KDC8, A0A8J8Y821, A2WST9, A2ZVL2, Q5ZE55
      Conserved Domains (1) summary
      cl00081
      Location:189 → 239
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

    3. XM_015765871.2 → XP_015621357.1  transcription factor bHLH144

      UniProtKB/TrEMBL
      A0A0N7KDC8, A0A8J8Y821, A2WST9, A2ZVL2, Q5ZE55
      Conserved Domains (1) summary
      cl00081
      Location:189 → 239
      bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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