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    LOC4334494 serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334494, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4334494
    Gene description
    serine/threonine-protein phosphatase PP2A-2 catalytic subunit-like
    Locus tag
    OSNPB_030805300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PP2A2; OsJ_012457
    Expression
    Ubiquitous expression in flowers (RPKM 46.7), roots after flowering (RPKM 45.8) and 6 other tissues See more
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    Genomic context

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    See LOC4334494 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33621915..33626503)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene squalene synthase Neighboring gene DEAD-box ATP-dependent RNA helicase 37-like Neighboring gene lipid phosphate phosphatase delta Neighboring gene probable acyl-activating enzyme 18, peroxisomal

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Mutual Regulation of Receptor-Like Kinase SIT1 and B'κ-PP2A Shapes the Early Response of Rice to Salt Stress. Zhao JL, et al. Plant Cell, 2019 Sep. PMID 31221736, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Protein Phosphatase 2A (PP2A) regulatory subunit B'kappa constrains SIT1 activity under salt stress.
      Title: Mutual Regulation of Receptor-Like Kinase SIT1 and B'κ-PP2A Shapes the Early Response of Rice to Salt Stress.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase PP2A-2 catalytic subunit
    Names
    LOC_Os03g59060
    OSJNBb0015I02.15
    XP_015631518.1
    XP_015631519.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402306.1 → NP_001389235.1  serine/threonine-protein phosphatase PP2A-2 catalytic subunit

      Status: VALIDATED

      Source sequence(s)
      CB682489, CB682490, CI126866, CI132633, CI308518
      UniProtKB/Swiss-Prot
      A2XN40, B7E5E8, P0C5D7, Q0IXS3, Q10BT5, Q338E3, Q75HI9, Q9SBW3, Q9XF94

    2. NM_001402307.1 → NP_001389236.1  serine/threonine-protein phosphatase PP2A-2 catalytic subunit

      Status: VALIDATED

      Source sequence(s)
      CB682489, CB682490, CI126866, CI132633, CI308518
      UniProtKB/Swiss-Prot
      A2XN40, B7E5E8, P0C5D7, Q0IXS3, Q10BT5, Q338E3, Q75HI9, Q9SBW3, Q9XF94

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33621915..33626503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776032.2 → XP_015631518.1  serine/threonine-protein phosphatase PP2A-2 catalytic subunit

      UniProtKB/Swiss-Prot
      Q10BT5
      Conserved Domains (1) summary
      cd07415
      Location:8 → 291
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain

    2. XM_015776033.2 → XP_015631519.1  serine/threonine-protein phosphatase PP2A-2 catalytic subunit

      UniProtKB/Swiss-Prot
      Q10BT5
      Conserved Domains (1) summary
      cd07415
      Location:8 → 291
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q10BT5.1 GenPept UniProtKB/Swiss-Prot:Q10BT5

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