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    CLPS5 CLP1-similar protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833990, updated on 15-Oct-2023

    Summary

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    Gene symbol
    CLPS5
    Gene description
    CLP1-similar protein 5
    Primary source
    Araport:AT5G39930
    Locus tag
    AT5G39930
    See related
    TAIR:AT5G39930
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CLP1-similar protein 5; MYH19.90; MYH19_90
    Summary
    Encodes a protein with similarity to the CLP1 polyadenylation factor.
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    Genomic context

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    See CLPS5 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (15985025..15987339, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Pectin lyase-like superfamily protein Neighboring gene pre-mRNA cleavage complex II protein Neighboring gene FAD/NAD(P)-binding oxidoreductase family protein Neighboring gene thioredoxin 2 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling. Hunt AG, et al. BMC Genomics, 2008 May 14. PMID 18479511, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_123356.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polynucleotide 5'-hydroxyl-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLP1-similar protein 5
    NP_198809.2
    • CLP1-similar protein 5 (CLPS5); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP-similar protein 3 (TAIR:AT3G04680.2); Has 693 Blast hits to 689 proteins in 274 species: Archae - 99; Bacteria - 14; Metazoa - 196; Fungi - 200; Plants - 63; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15985025..15987339 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123356.3 → NP_198809.2  CLP1-similar protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198809.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FLE2
      UniProtKB/TrEMBL
      A0A654G6J3, A0A7G2FFF6
      Conserved Domains (2) summary
      COG5623
      Location:6 → 421
      CLP1; Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
      pfam16575
      Location:121 → 310
      CLP1_P; mRNA cleavage and polyadenylation factor CLP1 P-loop
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FLE2.1

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