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    AT2G39960 Microsomal signal peptidase 25 kDa subunit (SPC25) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818583, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT2G39960
    Gene description
    Microsomal signal peptidase 25 kDa subunit (SPC25)
    Primary source
    Araport:AT2G39960
    Locus tag
    AT2G39960
    See related
    TAIR:AT2G39960
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T28M21.12; T28M21_12
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    Genomic context

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    See AT2G39960 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16681296..16683718, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene isoamylase 1 Neighboring gene RNI-like superfamily protein Neighboring gene flocculation protein Neighboring gene Mitochondrial substrate carrier family protein Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis glutaredoxin S17 and its partner, the nuclear factor Y subunit C11/negative cofactor 2α, contribute to maintenance of the shoot apical meristem under long-day photoperiod. Knuesting J, et al. Plant Physiol, 2015 Apr. PMID 25699589, Free PMC Article
    2. LIK1, a CERK1-interacting kinase, regulates plant immune responses in Arabidopsis. Le MH, et al. PLoS One, 2014. PMID 25036661, Free PMC Article
    3. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
    4. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157
    5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_129554.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in signal peptide processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of signal peptidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Microsomal signal peptidase 25 kDa subunit (SPC25)
    NP_181525.2
    • Microsomal signal peptidase 25 kDa subunit (SPC25); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: male gametophyte, callus; CONTAINS InterPro DOMAIN/s: Signal peptidase complex subunit 2 (InterPro:IPR009582); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 25 kDa subunit (SPC25) (TAIR:AT4G04200.1); Has 283 Blast hits to 281 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 36; Plants - 62; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16681296..16683718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129554.4 → NP_181525.2  Microsomal signal peptidase 25 kDa subunit (SPC25) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181525.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P58684
      UniProtKB/TrEMBL
      A0A178VMY0, A0A5S9X5K9, A0A654F0G2
      Conserved Domains (1) summary
      pfam06703
      Location:29 → 181
      SPC25; Microsomal signal peptidase 25 kDa subunit (SPC25)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P58684.1

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