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    Dipk1c divergent protein kinase domain 1C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498891, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Dipk1cprovided by RGD
    Official Full Name
    divergent protein kinase domain 1Cprovided by RGD
    Primary source
    RGD:1559694
    See related
    Ensembl:ENSRNOG00000015448 AllianceGenome:RGD:1559694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam69c; RGD1559694
    Summary
    Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DIPK1C (divergent protein kinase domain 1C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 24.2), Muscle (RPKM 4.7) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Dipk1c in Genome Data Viewer
    Location:
    18q12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (80362854..80384774)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (78087972..78109910)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (81569693..81591683)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene carnosine dipeptidase 1 Neighboring gene carnosine dipeptidase 2 Neighboring gene preferentially expressed antigen in melanoma-like 7, pseudogene 3 Neighboring gene similar to human chromosome 18 open reading frame 63

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    divergent protein kinase domain 1C
    Names
    family with sequence similarity 69, member C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      80362854..80384774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_574179.9 → XP_574179.1  divergent protein kinase domain 1C

      See identical proteins and their annotated locations for XP_574179.1

      UniProtKB/TrEMBL
      D3ZJ65
      Related
      ENSRNOP00000020858.5
      Conserved Domains (2) summary
      pfam12260
      Location:183 → 373
      PIP49_C; Protein-kinase domain of FAM69
      pfam14875
      Location:13 → 167
      PIP49_N; N-term cysteine-rich ER, FAM69
    Nucleotide Protein Strain
    Heading Accession and Version

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