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    C1h11orf98 similar to human chromosome 11 open reading frame 98 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690349, updated on 13-Apr-2024

    Summary

    Official Symbol
    C1h11orf98provided by RGD
    Official Full Name
    similar to human chromosome 11 open reading frame 98provided by RGD
    Primary source
    RGD:1597339
    See related
    Ensembl:ENSRNOG00000019701 AllianceGenome:RGD:1597339
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Lbhd1; RGD1304652; RGD1597339
    Summary
    Orthologous to human C11orf98 (chromosome 11 open reading frame 98). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 240.6), Spleen (RPKM 176.3) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See C1h11orf98 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215211658..215213687)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205782612..205784578)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (225080183..225087291)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene uncharacterized LOC102551607 Neighboring gene integrator complex subunit 5 Neighboring gene glucosidase II alpha subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C11orf98 homolog
    Names
    LBH domain containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109581.2NP_001103051.2  uncharacterized protein C11orf98 homolog

      See identical proteins and their annotated locations for NP_001103051.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I5Y8U8, A6HZX0, A6HZX1, D4AAM1
      Related
      ENSRNOP00000040218.3, ENSRNOT00000039991.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      215211658..215213687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063274763.1XP_063130833.1  uncharacterized protein C11orf98 homolog isoform X1