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    Cdv3 carnitine deficiency-associated gene expressed in ventricle 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315970, updated on 6-Jun-2024

    Summary

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    Official Symbol
    Cdv3provided by RGD
    Official Full Name
    carnitine deficiency-associated gene expressed in ventricle 3provided by RGD
    Primary source
    RGD:1359113
    See related
    Ensembl:ENSRNOG00000010186 AllianceGenome:RGD:1359113
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in cytosol and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human CDV3 (CDV3 homolog). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 596.4), Heart (RPKM 381.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cdv3 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (112812898..112826073, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (103934006..103947173, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (111837232..111850393, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480224 Neighboring gene uncharacterized LOC120094247 Neighboring gene inhibitor of carbonic anhydrase Neighboring gene DNA topoisomerase II binding protein 1 Neighboring gene uncharacterized LOC102550226 Neighboring gene beaded filament structural protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and characterization of TPP36 and its isoform TPP32, novel substrates of Abl tyrosine kinase. Tsuchiya K, et al. FEBS Lett, 2003 Feb 27. PMID 12606058
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    protein CDV3 homolog
    Names
    CDV3 homolog
    carnitine deficiency-associated gene expressed in ventricle 3 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014097.1 → NP_001014119.1  protein CDV3 homolog

      See identical proteins and their annotated locations for NP_001014119.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083654
      UniProtKB/Swiss-Prot
      Q5XIM5
      UniProtKB/TrEMBL
      A0A0G2K0B0, A6I2J7
      Related
      ENSRNOP00000040675.2, ENSRNOT00000044956.3
      Conserved Domains (1) summary
      pfam15359
      Location:106 → 224
      CDV3; Carnitine deficiency-associated protein 3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      112812898..112826073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063265607.1 → XP_063121677.1  protein CDV3 homolog isoform X2

    2. XM_063265608.1 → XP_063121678.1  protein CDV3 homolog isoform X4

      UniProtKB/TrEMBL
      A0A0G2K0B0

    3. XM_006243659.5 → XP_006243721.1  protein CDV3 homolog isoform X1

      See identical proteins and their annotated locations for XP_006243721.1

      UniProtKB/TrEMBL
      A0A8I6GA98, A6I2J5
      Related
      ENSRNOP00000084361.1
      Conserved Domains (1) summary
      pfam15359
      Location:106 → 224
      CDV3; Carnitine deficiency-associated protein 3

    4. XM_006243660.5 → XP_006243722.1  protein CDV3 homolog isoform X3

      UniProtKB/TrEMBL
      A0A0G2K0B0
      Conserved Domains (1) summary
      pfam15359
      Location:106 → 224
      CDV3; Carnitine deficiency-associated protein 3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5XIM5.1 GenPept UniProtKB/Swiss-Prot:Q5XIM5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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