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    1700010I14Rik RIKEN cDNA 1700010I14 gene [ Mus musculus (house mouse) ]

    Gene ID: 66931, updated on 9-May-2024

    Summary

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    Official Symbol
    1700010I14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700010I14 geneprovided by MGI
    Primary source
    MGI:MGI:1914181
    See related
    Ensembl:ENSMUSG00000023873 AllianceGenome:MGI:1914181
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in ileum; male reproductive gland or organ; and midbrain. Orthologous to human C6orf118 (chromosome 6 open reading frame 118). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 80.5) See more
    Orthologs
    human all
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    Genomic context

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    See 1700010I14Rik in Genome Data Viewer
    Location:
    17 A1; 17 5.53 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (9207152..9227151)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (8988320..9008319)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 10A Neighboring gene STARR-seq mESC enhancer starr_41770 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:8993464-8993573 Neighboring gene ribosomal protein L19 pseudogene Neighboring gene predicted gene, 34321 Neighboring gene STARR-seq mESC enhancer starr_41771 Neighboring gene STARR-positive B cell enhancer ABC_E314 Neighboring gene STARR-seq mESC enhancer starr_41772 Neighboring gene RIKEN cDNA 6530411M01 gene Neighboring gene STARR-seq mESC enhancer starr_41773 Neighboring gene predicted gene, 29711 Neighboring gene predicted gene, 52287

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice. Kaneda Y, et al. Andrology, 2023 Jul. PMID 36598146,
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    4. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice.
      Title: Testis-specific proteins, TSNAXIP1 and 1700010I14RIK, are important for sperm motility and male fertility in mice.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1)  1 citation
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C6orf118 homolog

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347544.1 → NP_001334473.1  uncharacterized protein C6orf118 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC122893, AK005830, AK161278, AV257018
      Consensus CDS
      CCDS84275.1
      UniProtKB/TrEMBL
      Q7TPG0, Q9DAH6
      Related
      ENSMUSP00000024650.6, ENSMUST00000024650.12

    2. NM_025851.3 → NP_080127.2  uncharacterized protein C6orf118 homolog isoform 1

      See identical proteins and their annotated locations for NP_080127.2

      Status: VALIDATED

      Source sequence(s)
      AC122893, AK006307, AV257018, BC050753
      Consensus CDS
      CCDS28385.2
      UniProtKB/TrEMBL
      A0A3B2W887, Q3TTN6
      Related
      ENSMUSP00000118841.2, ENSMUST00000151609.2
      Conserved Domains (3) summary
      pfam14235
      Location:351 → 418
      DUF4337; Domain of unknown function (DUF4337)
      pfam15739
      Location:242 → 344
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
      cl17173
      Location:431 → 482
      AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      9207152..9227151
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004939569.1 RNA Sequence

    2. XR_003952172.1 RNA Sequence

    3. XR_004939570.1 RNA Sequence

    4. XR_876377.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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