Pldi polymorphic derived intron containing [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Pldiprovided by MGI
Official Full Name: polymorphic derived intron containingprovided by MGI
Primary source: MGI:MGI:1920866
See related: Ensembl:ENSMUSG00000037247 AllianceGenome:MGI:1920866
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Poldi; 1700125F08Rik
Summary: Acts upstream of or within flagellated sperm motility. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Restricted expression toward testis adult (RPKM 14.3) See more
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Genomic context

Location:: 10 B4; 10 32.01 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	10	NC_000076.7 (60764005..60773911, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	10	NC_000076.6 (60928226..60938132, complement)

Chromosome 10 - NC_000076.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Results identify various factors, including rearrangement, transposable elements that contributed to the formation of the sequence origin of Pldi-Ak158810 loci.
Title: The de novo sequence origin of two long non-coding genes from an inter-genic region.
Poldi, a new gene from an intergenic region is characterized.
Title: Emergence of a new gene from an intergenic region.
A multi species comparison showed that this gene emerged from non-coding DNA within the mouse lineage via direct de novo evolution.
Title: Emergence of a new gene from an intergenic region.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2) 1 citation

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within flagellated sperm motility	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.