U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Snhg8 small nucleolar RNA host gene 8 [ Mus musculus (house mouse) ]

    Gene ID: 69895, updated on 17-Mar-2024

    Summary

    Official Symbol
    Snhg8provided by MGI
    Official Full Name
    small nucleolar RNA host gene 8provided by MGI
    Primary source
    MGI:MGI:1917145
    See related
    Ensembl:ENSMUSG00000104960 AllianceGenome:MGI:1917145
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1110065M07Rik; 2010109N14Rik
    Summary
    Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human SNHG8 (small nucleolar RNA host gene 8). [provided by Alliance of Genome Resources, Apr 2022]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Snhg8 in Genome Data Viewer
    Location:
    3 G1; 3 54.58 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (123301201..123301985, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (123507552..123508336, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40143 Neighboring gene predicted gene, 35065 Neighboring gene STARR-seq mESC enhancer starr_08911 Neighboring gene serine protease 12 neurotrypsin (motopsin) Neighboring gene STARR-positive B cell enhancer ABC_E6117 Neighboring gene STARR-positive B cell enhancer mm9_chr3:123219553-123219853 Neighboring gene small nucleolar RNA, H/ACA box 24 Neighboring gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene Neighboring gene STARR-seq mESC enhancer starr_08913 Neighboring gene N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 Neighboring gene STARR-seq mESC enhancer starr_08914 Neighboring gene STARR-seq mESC enhancer starr_08915

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Other Names

    • small nucleolar RNA host gene (non-protein coding) 8

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_028574.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124005
      Related
      ENSMUST00000198509.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      123301201..123301985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)