U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C19h1orf198 similar to human chromosome 1 open reading frame 198 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498967, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C19h1orf198provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 198provided by RGD
    Primary source
    RGD:1559896
    See related
    Ensembl:ENSRNOG00000018836 AllianceGenome:RGD:1559896
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559896
    Summary
    Predicted to be located in cytosol. Orthologous to human C1orf198 (chromosome 1 open reading frame 198). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 82.6), Heart (RPKM 72.6) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C19h1orf198 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (69501453..69526826, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (52604060..52629436, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (57396606..57422124, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene component of oligomeric golgi complex 2 Neighboring gene angiotensinogen Neighboring gene calpain 9 Neighboring gene uncharacterized LOC120098646 Neighboring gene tetratricopeptide repeat domain 13

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C1orf198 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109134.1 → NP_001102604.1  uncharacterized protein C1orf198 homolog

      See identical proteins and their annotated locations for NP_001102604.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474054
      UniProtKB/TrEMBL
      A6KJ13, D3ZY47
      Related
      ENSRNOP00000025512.4, ENSRNOT00000025512.5
      Conserved Domains (1) summary
      pfam15797
      Location:31 → 132
      DUF4706; Domain of unknown function (DUF4706)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      69501453..69526826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008772643.4 → XP_008770865.1  uncharacterized protein C1orf198 homolog isoform X1

      Conserved Domains (1) summary
      PRK07994
      Location:100 → 184
      PRK07994; DNA polymerase III subunits gamma and tau; Validated
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools