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    Zswim5 zinc finger, SWIM-type containing 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313524, updated on 13-Apr-2024

    Summary

    Official Symbol
    Zswim5provided by RGD
    Official Full Name
    zinc finger, SWIM-type containing 5provided by RGD
    Primary source
    RGD:1310741
    See related
    Ensembl:ENSRNOG00000018160 AllianceGenome:RGD:1310741
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be part of Cul2-RING ubiquitin ligase complex. Orthologous to human ZSWIM5 (zinc finger SWIM-type containing 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 55.3), Kidney (RPKM 30.6) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Zswim5 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (135583356..135700390)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (130346733..130463791)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (135735825..135854525)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550980 Neighboring gene U6 spliceosomal RNA Neighboring gene large ribosomal subunit protein eL18-like Neighboring gene uroporphyrinogen decarboxylase Neighboring gene HECT domain E3 ubiquitin protein ligase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Cul2-RING ubiquitin ligase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    zinc finger SWIM domain-containing protein 5
    Names
    zinc finger, SWIM domain containing 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401321.1NP_001388250.1  zinc finger SWIM domain-containing protein 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      Related
      ENSRNOP00000060196.2, ENSRNOT00000068267.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      135583356..135700390
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001107963.1: Suppressed sequence

      Description
      NM_001107963.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.