U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Nudcd1 NudC domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362906, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Nudcd1provided by RGD
    Official Full Name
    NudC domain containing 1provided by RGD
    Primary source
    RGD:1310624
    See related
    Ensembl:ENSRNOG00000024929 AllianceGenome:RGD:1310624
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310624
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human NUDCD1 (NudC domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 78.7), Testes (RPKM 70.9) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Nudcd1 in Genome Data Viewer
    Location:
    7q31
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (77436035..77480651, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (75550650..75595976, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (83302778..83348534, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone receptor Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ENY2, transcription and export complex 2 subunit Neighboring gene PKHD1 like 1 Neighboring gene estrogen receptor binding site associated antigen 9

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    nudC domain-containing protein 1
    NP_001124033.1
    XP_006241676.1
    XP_038935443.1
    XP_063119907.1
    XP_063119908.1
    XP_063119910.1
    XP_063119911.1
    XP_063119912.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130561.2 → NP_001124033.1  nudC domain-containing protein 1

      See identical proteins and their annotated locations for NP_001124033.1

      Status: PROVISIONAL

      Source sequence(s)
      BC169014
      UniProtKB/TrEMBL
      A0A9K3Y8F7, B5DFD1, F7F163
      Related
      ENSRNOP00000006685.6, ENSRNOT00000006685.6
      Conserved Domains (1) summary
      cl00175
      Location:275 → 358
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      77436035..77480651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006241614.5 → XP_006241676.1  nudC domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AGF4
      Related
      ENSRNOP00000091595.1
      Conserved Domains (1) summary
      cl00175
      Location:274 → 357
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    2. XM_063263838.1 → XP_063119908.1  nudC domain-containing protein 1 isoform X3

    3. XM_063263837.1 → XP_063119907.1  nudC domain-containing protein 1 isoform X2

    4. XM_063263841.1 → XP_063119911.1  nudC domain-containing protein 1 isoform X6

    5. XM_039079515.2 → XP_038935443.1  nudC domain-containing protein 1 isoform X4

      Conserved Domains (1) summary
      cl00175
      Location:124 → 207
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    6. XM_063263842.1 → XP_063119912.1  nudC domain-containing protein 1 isoform X7

    7. XM_063263840.1 → XP_063119910.1  nudC domain-containing protein 1 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools