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    Olfml2b olfactomedin-like 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304960, updated on 5-Mar-2024

    Summary

    Official Symbol
    Olfml2bprovided by RGD
    Official Full Name
    olfactomedin-like 2Bprovided by RGD
    Primary source
    RGD:1309257
    See related
    Ensembl:ENSRNOG00000003018 AllianceGenome:RGD:1309257
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable extracellular matrix binding activity and identical protein binding activity. Predicted to act upstream of or within extracellular matrix organization. Predicted to be located in extracellular matrix. Orthologous to human OLFML2B (olfactomedin like 2B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 96.5), Muscle (RPKM 95.7) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Olfml2b in Genome Data Viewer
    Location:
    13q24
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (85402151..85439342)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (82869414..82906607)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (88995301..89032487)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 1 adaptor protein Neighboring gene uncharacterized LOC120096313 Neighboring gene uncharacterized LOC102550090 Neighboring gene activating transcription factor 6 Neighboring gene U6 spliceosomal RNA Neighboring gene 40S ribosomal protein S27-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables extracellular matrix binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within extracellular matrix organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    olfactomedin-like protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107195.1NP_001100665.1  olfactomedin-like protein 2B precursor

      See identical proteins and their annotated locations for NP_001100665.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A6IDP9
      Conserved Domains (2) summary
      pfam02191
      Location:494742
      OLF; Olfactomedin-like domain
      pfam05377
      Location:176202
      FlaC_arch; Flagella accessory protein C (FlaC)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      85402151..85439342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006250219.4XP_006250281.1  olfactomedin-like protein 2B isoform X1

      UniProtKB/TrEMBL
      D4A0J7
      Related
      ENSRNOP00000004117.5
      Conserved Domains (2) summary
      pfam02191
      Location:496744
      OLF; Olfactomedin-like domain
      pfam05377
      Location:176202
      FlaC_arch; Flagella accessory protein C (FlaC)