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    Oas1i 2 ' -5 ' oligoadenylate synthetase 1I [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304507, updated on 29-Feb-2024

    Summary

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    Symbol
    Oas1iprovided by RGD
    Full Name
    2 ' -5 ' oligoadenylate synthetase 1Iprovided by RGD
    Primary source
    RGD:1359379
    See related
    Ensembl:ENSRNOG00000069835 AllianceGenome:RGD:1359379
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable 2'-5'-oligoadenylate synthetase activity and double-stranded RNA binding activity. Predicted to be involved in defense response to virus; negative regulation of viral genome replication; and regulation of ribonuclease activity. Predicted to be integral component of membrane. Predicted to be active in cytosol; membrane; and nucleoplasm. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Spleen (RPKM 45.3), Thymus (RPKM 40.4) and 9 other tissues See more
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    Genomic context

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    See Oas1i in Genome Data Viewer
    Location:
    12q16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (41285201..41297242)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (35624566..35636608)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (41155489..41167501)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481334 Neighboring gene rabphilin 3A Neighboring gene uncharacterized LOC134481190 Neighboring gene 2'-5' oligoadenylate synthetase 1D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables 2'-5'-oligoadenylate synthetase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response to virus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in negative regulation of viral genome replication IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of ribonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    2 ' -5 ' oligoadenylate synthetase 1I
    Names
    2'-5' oligoadenylate synthetase 1I

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009680.1 → NP_001009680.1  2 ' -5 ' oligoadenylate synthetase 1I

      See identical proteins and their annotated locations for NP_001009680.1

      Status: PROVISIONAL

      Source sequence(s)
      AY196697
      UniProtKB/TrEMBL
      D3ZFI0, Q5MYX1
      Related
      ENSRNOP00000048340.2, ENSRNOT00000043279.4
      Conserved Domains (2) summary
      cd05400
      Location:29 → 212
      NT_2-5OAS_ClassI-CCAase; Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme
      pfam10421
      Location:164 → 348
      OAS1_C; 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      41285201..41297242
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089489.2 → XP_038945417.1  2 ' -5 ' oligoadenylate synthetase 1I isoform X2

      Conserved Domains (1) summary
      pfam10421
      Location:25 → 209
      OAS1_C; 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus

    2. XM_039089488.2 → XP_038945416.1  2 ' -5 ' oligoadenylate synthetase 1I isoform X1

      Conserved Domains (1) summary
      pfam10421
      Location:32 → 216
      OAS1_C; 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus

    RNA

    1. XR_005491625.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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