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    Ldlrad1 low density lipoprotein receptor class A domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689088, updated on 2-May-2024

    Summary

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    Official Symbol
    Ldlrad1provided by RGD
    Official Full Name
    low density lipoprotein receptor class A domain containing 1provided by RGD
    Primary source
    RGD:1597398
    See related
    Ensembl:ENSRNOG00000037795 AllianceGenome:RGD:1597398
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be integral component of membrane. Orthologous to human LDLRAD1 (low density lipoprotein receptor class A domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 61.7), Thymus (RPKM 24.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ldlrad1 in Genome Data Viewer
    Location:
    5q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (127212581..127229753)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (121984245..122000941)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (126812168..126821437)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A N-terminal and central domain containing 2 Neighboring gene transfer RNA alanine (anticodon AGC) 38 Neighboring gene transmembrane protein 59 Neighboring gene leucine rich repeat containing 42 Neighboring gene intraflagellar transport 25 Neighboring gene iodothyronine deiodinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    low-density lipoprotein receptor class A domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      127212581..127229753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261321.1 → XP_063117391.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X2

    2. XM_039111136.2 → XP_038967064.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X1

    3. XM_063261322.1 → XP_063117392.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X5

    4. XM_063261323.1 → XP_063117393.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X8

    5. XM_039111143.2 → XP_038967071.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X4

    6. XM_006238557.4 → XP_006238619.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X3

      See identical proteins and their annotated locations for XP_006238619.1

      UniProtKB/TrEMBL
      D4A460
      Related
      ENSRNOP00000054184.4

    7. XM_039111145.2 → XP_038967073.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X7

    8. XM_039111144.2 → XP_038967072.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X6

    9. XM_039111141.2 → XP_038967069.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      D4A460
    Nucleotide Protein Strain
    Heading Accession and Version

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