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    C030037D09Rik RIKEN cDNA C030037D09 gene [ Mus musculus (house mouse) ]

    Gene ID: 193280, updated on 8-Feb-2024

    Summary

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    Official Symbol
    C030037D09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA C030037D09 geneprovided by MGI
    Primary source
    MGI:MGI:1924865
    See related
    AllianceGenome:MGI:1924865
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9330160M04
    Summary
    Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 22.8), adrenal adult (RPKM 3.4) and 14 other tissues See more
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    Genomic context

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    See C030037D09Rik in Genome Data Viewer
    Location:
    11 C; 11 54.34 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (88609469..88619398)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (88718643..88728572)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene musashi RNA-binding protein 2 Neighboring gene predicted gene 11510 Neighboring gene STARR-seq mESC enhancer starr_30343 Neighboring gene STARR-positive B cell enhancer ABC_E10704 Neighboring gene RIKEN cDNA 0610039H22 gene Neighboring gene STARR-positive B cell enhancer mm9_chr11:88476068-88476369 Neighboring gene STARR-positive B cell enhancer ABC_E735 Neighboring gene STARR-seq mESC enhancer starr_30351 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:88488860-88488969 Neighboring gene STARR-seq mESC enhancer starr_30353 Neighboring gene STARR-seq mESC enhancer starr_30356 Neighboring gene STARR-seq mESC enhancer starr_30358 Neighboring gene STARR-seq mESC enhancer starr_30361 Neighboring gene STARR-positive B cell enhancer ABC_E5262 Neighboring gene STARR-seq mESC enhancer starr_30363 Neighboring gene RIKEN cDNA 4930556N13 gene Neighboring gene STARR-positive B cell enhancer ABC_E7042 Neighboring gene A kinase anchor protein 1 Neighboring gene predicted gene, 23507

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article
    2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038058.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL645601

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      88609469..88619398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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