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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001396597.1 → NP_001383526.1 chromodomain-helicase-DNA-binding protein 1
Status: VALIDATED
- Source sequence(s)
-
JAENSK010000521
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1680 → 1782
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly
Genomic
-
NC_052571.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly
- Range
-
5523892..5640037 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_040655246.2 → XP_040511180.1 chromodomain-helicase-DNA-binding protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (5) summary
-
- PLN03142
Location:422 → 958
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1638 → 1740
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:345 → 401
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:228 → 312
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- NF000535
Location:2 → 144
- MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
-
XM_015300461.4 → XP_015155947.1 chromodomain-helicase-DNA-binding protein 1 isoform X5
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (8) summary
-
- cd00024
Location:264 → 313
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:458 → 603
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam00176
Location:442 → 723
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:761 → 860
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:348 → 401
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam08648
Location:1588 → 1702
- DUF1777; Protein of unknown function (DUF1777)
- pfam11496
Location:676 → 929
- HDA2-3; Class II histone deacetylase complex subunits 2 and 3
- pfam13907
Location:1451 → 1542
- DUF4208; Domain of unknown function (DUF4208)
-
XM_040655243.2 → XP_040511177.1 chromodomain-helicase-DNA-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A8V0YEN5, A0A8V0YHW3
- Related
- ENSGALP00010017378.1, ENSGALT00010029843.1
- Conserved Domains (4) summary
-
- PLN03142
Location:428 → 964
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1658 → 1760
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:351 → 407
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:234 → 318
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_015300464.4 → XP_015155950.1 chromodomain-helicase-DNA-binding protein 1 isoform X10
- UniProtKB/TrEMBL
- A0A8V0YEP1, A0A8V0YHW3
- Related
- ENSGALP00010017385.1, ENSGALT00010029856.1
-
XM_015300460.4 → XP_015155946.1 chromodomain-helicase-DNA-binding protein 1 isoform X2
- UniProtKB/TrEMBL
- A0A182C5Y8, A0A8V0YHW3, A0A8V0YMN8
- Related
- ENSGALP00010017380.1, ENSGALT00010029847.1
- Conserved Domains (8) summary
-
- cd00024
Location:286 → 335
- CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
- cd00046
Location:480 → 625
- DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
- pfam00176
Location:464 → 745
- SNF2_N; SNF2 family N-terminal domain
- pfam00271
Location:783 → 882
- Helicase_C; Helicase conserved C-terminal domain
- pfam00385
Location:370 → 423
- Chromo; Chromo (CHRromatin Organization MOdifier) domain
- pfam08648
Location:1610 → 1724
- DUF1777; Protein of unknown function (DUF1777)
- pfam11496
Location:698 → 951
- HDA2-3; Class II histone deacetylase complex subunits 2 and 3
- pfam13907
Location:1473 → 1564
- DUF4208; Domain of unknown function (DUF4208)
-
XM_040655242.2 → XP_040511176.1 chromodomain-helicase-DNA-binding protein 1 isoform X3
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1666 → 1768
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655247.2 → XP_040511181.1 chromodomain-helicase-DNA-binding protein 1 isoform X8
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1598 → 1700
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655245.2 → XP_040511179.1 chromodomain-helicase-DNA-binding protein 1 isoform X6
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Related
- ENSGALP00010017382.1, ENSGALT00010029851.1
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1639 → 1741
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655248.2 → XP_040511182.1 chromodomain-helicase-DNA-binding protein 1 isoform X9
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1594 → 1696
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655240.2 → XP_040511174.1 chromodomain-helicase-DNA-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:450 → 986
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1680 → 1782
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:373 → 429
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:256 → 340
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655244.2 → XP_040511178.1 chromodomain-helicase-DNA-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A8V0YEN5, A0A8V0YHW3
- Conserved Domains (4) summary
-
- PLN03142
Location:428 → 964
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1658 → 1760
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:351 → 407
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:234 → 318
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
-
XM_040655249.2 → XP_040511183.1 chromodomain-helicase-DNA-binding protein 1 isoform X11
- UniProtKB/TrEMBL
-
A0A8V0YMM9
- Conserved Domains (4) summary
-
- PLN03142
Location:187 → 723
- PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
- TIGR01642
Location:1417 → 1519
- U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
- cd18661
Location:110 → 166
- CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
- cd18666
Location:1 → 77
- CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w
Genomic
-
NC_059535.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w
- Range
-
5523892..5640037 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_046934419.1 → XP_046790375.1 chromodomain-helicase-DNA-binding protein 1 isoform X7
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934417.1 → XP_046790373.1 chromodomain-helicase-DNA-binding protein 1 isoform X5
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934415.1 → XP_046790371.1 chromodomain-helicase-DNA-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A8V0YEN5, A0A8V0YHW3
-
XM_046934422.1 → XP_046790378.1 chromodomain-helicase-DNA-binding protein 1 isoform X10
- UniProtKB/TrEMBL
- A0A8V0YEP1, A0A8V0YHW3
-
XM_046934413.1 → XP_046790369.1 chromodomain-helicase-DNA-binding protein 1 isoform X2
- UniProtKB/TrEMBL
- A0A182C5Y8, A0A8V0YHW3, A0A8V0YMN8
-
XM_046934414.1 → XP_046790370.1 chromodomain-helicase-DNA-binding protein 1 isoform X3
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934420.1 → XP_046790376.1 chromodomain-helicase-DNA-binding protein 1 isoform X8
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934418.1 → XP_046790374.1 chromodomain-helicase-DNA-binding protein 1 isoform X6
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934421.1 → XP_046790377.1 chromodomain-helicase-DNA-binding protein 1 isoform X9
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934412.1 → XP_046790368.1 chromodomain-helicase-DNA-binding protein 1 isoform X1
- UniProtKB/TrEMBL
-
A0A8V0YHW3
-
XM_046934416.1 → XP_046790372.1 chromodomain-helicase-DNA-binding protein 1 isoform X4
- UniProtKB/TrEMBL
- A0A8V0YEN5, A0A8V0YHW3
-
XM_046934423.1 → XP_046790379.1 chromodomain-helicase-DNA-binding protein 1 isoform X11
- UniProtKB/TrEMBL
-
A0A8V0YMM9