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    Bltp3b bridge-like lipid transfer protein family member 3B [ Mus musculus (house mouse) ]

    Gene ID: 75089, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Bltp3bprovided by MGI
    Official Full Name
    bridge-like lipid transfer protein family member 3Bprovided by MGI
    Primary source
    MGI:MGI:2442888
    See related
    Ensembl:ENSMUSG00000019951 AllianceGenome:MGI:2442888
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Uhrf1bp1l; mKIAA0701; 2010319N22Rik; 4930506D01Rik; E030041M21Rik
    Summary
    Predicted to enable GARP complex binding activity and protein homodimerization activity. Predicted to be located in cytosol and early endosome. Orthologous to human UHRF1BP1L (UHRF1 binding protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 7.5), frontal lobe adult (RPKM 6.5) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Bltp3b in Genome Data Viewer
    Location:
    10 C2; 10 45.22 cM
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (89580830..89655753)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (89744968..89819891)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E2334 Neighboring gene STARR-positive B cell enhancer ABC_E6899 Neighboring gene STARR-seq mESC enhancer starr_27525 Neighboring gene predicted gene, 30963 Neighboring gene ARP6 actin-related protein 6 Neighboring gene STARR-seq mESC enhancer starr_27526 Neighboring gene predicted gene, 31090 Neighboring gene predicted gene, 26180 Neighboring gene SEC61 translocon subunit gamma, pseudogene 1 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Prediction of the coding sequences of mouse homologues of KIAA gene: I. The complete nucleotide sequences of 100 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2002 Oct 31. PMID 12465718
    2. Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders. Li J, et al. Nat Neurosci, 2017 Aug. PMID 28671696, Free PMC Article
    3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
    4. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (20) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA0701

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables GARP complex binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables lipid transfer activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in early endosome to Golgi transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in intermembrane lipid transfer ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in early endosome ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    bridge-like lipid transfer protein family member 3B
    Names
    UHRF1 (ICBP90) binding protein 1-like
    UHRF1-binding protein 1-like
    syntaxin-6 Habc-interacting protein of 164 kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029166.2 → NP_083442.2  bridge-like lipid transfer protein family member 3B

      See identical proteins and their annotated locations for NP_083442.2

      Status: VALIDATED

      Source sequence(s)
      AC130216, AK015715, AK046432, AK141050, BB529788, BM202084
      Consensus CDS
      CCDS36028.1
      UniProtKB/Swiss-Prot
      A2RSJ4, B2RQV0, E9QMH4, Q8CHD4
      Related
      ENSMUSP00000020112.6, ENSMUST00000020112.7
      Conserved Domains (1) summary
      pfam12624
      Location:3 → 87
      Chorein_N; N-terminal region of Chorein or VPS13

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      89580830..89655753
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314128.2 → XP_017169617.1  bridge-like lipid transfer protein family member 3B isoform X1

      Conserved Domains (1) summary
      pfam12624
      Location:3 → 96
      Chorein_N; N-terminal region of Chorein or VPS13

    2. XM_036156067.1 → XP_036011960.1  bridge-like lipid transfer protein family member 3B isoform X3

      Conserved Domains (1) summary
      pfam12624
      Location:5 → 87
      Chorein_N; N-terminal region of Chorein or VPS13

    3. XM_030245339.1 → XP_030101199.1  bridge-like lipid transfer protein family member 3B isoform X2

      Conserved Domains (1) summary
      pfam12624
      Location:1 → 39
      Chorein_N; N-terminal region of Chorein or VPS13

    4. XM_030245342.2 → XP_030101202.1  bridge-like lipid transfer protein family member 3B isoform X4

    5. XM_006514264.3 → XP_006514327.1  bridge-like lipid transfer protein family member 3B isoform X2

      Conserved Domains (1) summary
      pfam12624
      Location:1 → 39
      Chorein_N; N-terminal region of Chorein or VPS13

    6. XM_036156066.1 → XP_036011959.1  bridge-like lipid transfer protein family member 3B isoform X2

      Conserved Domains (1) summary
      pfam12624
      Location:1 → 39
      Chorein_N; N-terminal region of Chorein or VPS13

    7. XM_017314129.3 → XP_017169618.1  bridge-like lipid transfer protein family member 3B isoform X5

    RNA

    1. XR_380453.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2RSJ4.2 GenPept UniProtKB/Swiss-Prot:A2RSJ4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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