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    Zfp618 zinc finger protein 618 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313253, updated on 2-May-2024

    Summary

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    Symbol
    Zfp618provided by RGD
    Full Name
    zinc finger protein 618provided by RGD
    Primary source
    RGD:1310743
    See related
    Ensembl:ENSRNOG00000062890 AllianceGenome:RGD:1310743
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf618
    Summary
    Predicted to enable identical protein binding activity and transcription coregulator binding activity. Predicted to be involved in positive regulation of chromatin binding activity. Predicted to be located in pericentric heterochromatin. Orthologous to human ZNF618 (zinc finger protein 618). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 76.7), Adrenal (RPKM 38.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp618 in Genome Data Viewer
    Location:
    5q24
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (81414051..81580364)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (76398514..76564837)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (78806585..78972433)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102896 Neighboring gene uncharacterized LOC134487070 Neighboring gene alpha-1-microglobulin/bikunin precursor Neighboring gene kinesin family member 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription coregulator binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of chromatin ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of pericentric heterochromatin ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 618

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      81414051..81580364
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008763813.4 → XP_008762035.1  zinc finger protein 618 isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZLB0
      Related
      ENSRNOP00000078682.1
      Conserved Domains (1) summary
      sd00017
      Location:148 → 168
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_017593751.3 → XP_017449240.1  zinc finger protein 618 isoform X6

    3. XM_039111067.2 → XP_038966995.1  zinc finger protein 618 isoform X7

      Conserved Domains (1) summary
      sd00017
      Location:148 → 168
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_063261297.1 → XP_063117367.1  zinc finger protein 618 isoform X1

    5. XM_063261299.1 → XP_063117369.1  zinc finger protein 618 isoform X4

    6. XM_063261298.1 → XP_063117368.1  zinc finger protein 618 isoform X2

    7. XM_063261300.1 → XP_063117370.1  zinc finger protein 618 isoform X5

    8. XM_063261301.1 → XP_063117371.1  zinc finger protein 618 isoform X8

    9. XM_008763816.4 → XP_008762038.1  zinc finger protein 618 isoform X10

      Conserved Domains (1) summary
      sd00017
      Location:116 → 136
      ZF_C2H2; C2H2 Zn finger [structural motif]

    10. XM_017593752.3 → XP_017449241.1  zinc finger protein 618 isoform X11

    11. XM_017593753.3 → XP_017449242.1  zinc finger protein 618 isoform X12

      UniProtKB/TrEMBL
      A0A8I6GK11
      Related
      ENSRNOP00000092938.1

    12. XM_063261302.1 → XP_063117372.1  zinc finger protein 618 isoform X9

    13. XM_063261303.1 → XP_063117373.1  zinc finger protein 618 isoform X13

    Nucleotide Protein Strain
    Heading Accession and Version

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