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    Sox21os1 SRY (sex determining region Y)-box 21, opposite strand 1 [ Mus musculus (house mouse) ]

    Gene ID: 105245869, updated on 13-Mar-2024

    Summary

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    Official Symbol
    Sox21os1provided by MGI
    Official Full Name
    SRY (sex determining region Y)-box 21, opposite strand 1provided by MGI
    Primary source
    MGI:MGI:3782856
    See related
    Ensembl:ENSMUSG00000090534 AllianceGenome:MGI:3782856
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm4675; 100043825
    Summary
    Orthologous to human SOX21-AS1 (SOX21 antisense divergent transcript 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in stomach adult (RPKM 7.8), CNS E11.5 (RPKM 2.9) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Sox21os1 in Genome Data Viewer
    Location:
    14 E4; 14 61.92 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (118473644..118498611)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (118236232..118261199)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933431J24 gene Neighboring gene predicted gene, 31981 Neighboring gene predicted gene, 32045 Neighboring gene STARR-seq mESC enhancer starr_37639 Neighboring gene SRY (sex determining region Y)-box 21 Neighboring gene microRNA 6241 Neighboring gene predicted gene 9376 Neighboring gene predicted gene, 23669

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Hezroni H, et al. Cell Rep, 2015 May 19. PMID 25959816, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_131969.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks one exon and includes two alternate exons, compared to variant 1.
      Source sequence(s)
      BE654891, CT025686

    2. NR_131970.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AK039417, CT025686
      Related
      ENSMUST00000164755.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      118473644..118498611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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