Fam171b family with sequence similarity 171, member B [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Fam171bprovided by RGD
Official Full Name: family with sequence similarity 171, member Bprovided by RGD
Primary source: RGD:1562526
See related: Ensembl:ENSRNOG00000004783 AllianceGenome:RGD:1562526
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1562526
Summary: Predicted to be integral component of membrane. Orthologous to human FAM171B (family with sequence similarity 171 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Brain (RPKM 164.5), Uterus (RPKM 18.0) and 4 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 3q24

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (89337566..89392973)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (68930755..68986113)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (71210048..71265419)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in synapse	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein FAM171B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001430765.1 → NP_001417694.1 protein FAM171B precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000003

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086021.1 Reference GRCr8

Range

89337566..89392973

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_575160.9 → XP_575160.2 protein FAM171B

UniProtKB/TrEMBL

A6HMP5, D3ZTG3

Related

ENSRNOP00000006504.6

Conserved Domains (1) summary

pfam10577
Location:82 → 823

UPF0560; uncharacterized protein family UPF0560