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    C20h6orf136 similar to human chromosome 6 open reading frame 136 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294231, updated on 3-Apr-2024

    Summary

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    Official Symbol
    C20h6orf136provided by RGD
    Official Full Name
    similar to human chromosome 6 open reading frame 136provided by RGD
    Primary source
    RGD:1302996
    See related
    AllianceGenome:RGD:1302996
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1302996
    Summary
    Orthologous to human C6orf136 (chromosome 6 open reading frame 136). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 111.4), Muscle (RPKM 87.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C20h6orf136 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (2862567..2866756)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (2857840..2861952)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (3364787..3368923)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene mitochondrial ribosomal protein S18B Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene DEAH-box helicase 16 Neighboring gene protein phosphatase 1, regulatory subunit 18 Neighboring gene microRNA 6328

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article
    2. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC15854, MGC108866

    General protein information

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    Preferred Names
    uncharacterized protein C6orf136 homolog
    Names
    hypothetical protein MGC:15854

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213610.3 → NP_998775.2  uncharacterized protein C6orf136 homolog

      See identical proteins and their annotated locations for NP_998775.2

      Status: VALIDATED

      Source sequence(s)
      BC088194
      UniProtKB/TrEMBL
      A6KT78
      Conserved Domains (1) summary
      pfam10184
      Location:145 → 270
      DUF2358; Uncharacterized conserved protein (DUF2358)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      2862567..2866756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098477.2 → XP_038954405.1  uncharacterized protein C6orf136 homolog isoform X2

      Conserved Domains (1) summary
      pfam10184
      Location:98 → 223
      DUF2358; Uncharacterized conserved protein (DUF2358)

    2. XM_039098479.2 → XP_038954407.1  uncharacterized protein C6orf136 homolog isoform X3

      Conserved Domains (1) summary
      pfam10184
      Location:94 → 219
      DUF2358; Uncharacterized conserved protein (DUF2358)

    3. XM_006255918.4 → XP_006255980.1  uncharacterized protein C6orf136 homolog isoform X1

      Conserved Domains (1) summary
      pfam10184
      Location:141 → 266
      DUF2358; Uncharacterized conserved protein (DUF2358)

    4. XM_063278996.1 → XP_063135066.1  uncharacterized protein C6orf136 homolog isoform X4

      UniProtKB/Swiss-Prot
      Q6MG12
      UniProtKB/TrEMBL
      A6KT79
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6MG12.1 GenPept UniProtKB/Swiss-Prot:Q6MG12

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