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    Obscn obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [ Rattus norvegicus (Norway rat) ]

    Gene ID: 338458, updated on 6-Jun-2024

    Summary

    Symbol
    Obscnprovided by RGD
    Full Name
    obscurin, cytoskeletal calmodulin and titin-interacting RhoGEFprovided by RGD
    Primary source
    RGD:631335
    See related
    Ensembl:ENSRNOG00000058068 AllianceGenome:RGD:631335
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305774
    Summary
    Predicted to enable several functions, including cytoskeletal protein binding activity; phosphatidylinositol phosphate binding activity; and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in negative regulation of phosphatidylinositol 3-kinase signaling and protein autophosphorylation. Located in M band and Z disc. Orthologous to human OBSCN (obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 1663.2) and Heart (RPKM 448.3) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Obscn in Genome Data Viewer
    Location:
    10q22
    Exon count:
    122
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (44273686..44419275, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (43774113..43919718, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (45353185..45483570, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555997 Neighboring gene tripartite motif-containing 17 Neighboring gene tripartite motif-containing 11 Neighboring gene uncharacterized LOC100911111 Neighboring gene iron-sulfur cluster assembly factor IBA57 Neighboring gene gap junction protein, gamma 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ankyrin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables cadherin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables guanyl-nucleotide exchange factor activity NAS
    Non-traceable Author Statement
    more info
    PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables phosphatidylinositol bisphosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-3,4,5-trisphosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-3,4-bisphosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-3-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-4,5-bisphosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-4-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables phosphatidylinositol-5-phosphate binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables titin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in M band IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in M band ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Z disc IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in Z disc ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intercalated disc ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sarcolemma ISO
    Inferred from Sequence Orthology
    more info
     
    located_in sarcomere IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    obscurin
    Names
    obscurin-like
    XP_038943147.1
    XP_038943148.1
    XP_038943169.1
    XP_038943171.1
    XP_038943173.1
    XP_038943174.1
    XP_038943176.1
    XP_038943177.1
    XP_038943178.1
    XP_063126174.1
    XP_063126175.1
    XP_063126176.1
    XP_063126177.1
    XP_063126178.1
    XP_063126179.1
    XP_063126180.1
    XP_063126181.1
    XP_063126182.1
    XP_063126183.1
    XP_063126184.1
    XP_063126185.1
    XP_063126186.1
    XP_063126187.1
    XP_063126188.1
    XP_063126189.1
    XP_063126190.1
    XP_063126191.1
    XP_063126192.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      44273686..44419275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270116.1XP_063126186.1  obscurin isoform X15

    2. XM_063270112.1XP_063126182.1  obscurin isoform X10

    3. XM_063270115.1XP_063126185.1  obscurin isoform X14

    4. XM_063270118.1XP_063126188.1  obscurin isoform X17

    5. XM_063270109.1XP_063126179.1  obscurin isoform X7

    6. XM_063270114.1XP_063126184.1  obscurin isoform X13

    7. XM_063270110.1XP_063126180.1  obscurin isoform X8

    8. XM_063270111.1XP_063126181.1  obscurin isoform X9

    9. XM_039087250.1XP_038943178.1  obscurin isoform X24

      Conserved Domains (11) summary
      cd12025
      Location:59836045
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:79177995
      FN3; Fibronectin type 3 domain
      cd00063
      Location:48654950
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:62636387
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:64886567
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:63956485
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:60786254
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:68507106
      PKc_like; Protein Kinases, catalytic domain
    10. XM_039087246.1XP_038943174.1  obscurin isoform X21

      Conserved Domains (11) summary
      cd12025
      Location:62476309
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:81818259
      FN3; Fibronectin type 3 domain
      cd00063
      Location:51295214
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:65276651
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:67526831
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:66596749
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:63426518
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:71147370
      PKc_like; Protein Kinases, catalytic domain
    11. XM_039087249.1XP_038943177.1  obscurin isoform X23

      Conserved Domains (11) summary
      cd12025
      Location:60716133
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:80058083
      FN3; Fibronectin type 3 domain
      cd00063
      Location:49535038
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:63516475
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:65766655
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:64836573
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:61666342
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:69387194
      PKc_like; Protein Kinases, catalytic domain
    12. XM_039087245.1XP_038943173.1  obscurin isoform X20

      Conserved Domains (11) summary
      cd12025
      Location:63356397
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:82698347
      FN3; Fibronectin type 3 domain
      cd00063
      Location:52175302
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:66156739
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:68406919
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:67476837
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:64306606
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:72027458
      PKc_like; Protein Kinases, catalytic domain
    13. XM_039087248.1XP_038943176.1  obscurin isoform X22

      Conserved Domains (11) summary
      cd12025
      Location:61596221
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:80938171
      FN3; Fibronectin type 3 domain
      cd00063
      Location:50415126
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:64396563
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:66646743
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:65716661
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:62546430
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:70267282
      PKc_like; Protein Kinases, catalytic domain
    14. XM_039087243.1XP_038943171.1  obscurin isoform X19

      Conserved Domains (11) summary
      cd12025
      Location:64236485
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:83578435
      FN3; Fibronectin type 3 domain
      cd00063
      Location:53055390
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:67036827
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:69287007
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:68356925
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:65186694
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:72907546
      PKc_like; Protein Kinases, catalytic domain
    15. XM_063270106.1XP_063126176.1  obscurin isoform X4

    16. XM_063270117.1XP_063126187.1  obscurin isoform X16

    17. XM_063270108.1XP_063126178.1  obscurin isoform X6

    18. XM_039087241.1XP_038943169.1  obscurin isoform X18

      Conserved Domains (11) summary
      cd12025
      Location:65136575
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:84478525
      FN3; Fibronectin type 3 domain
      cd00063
      Location:53955480
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:67936917
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:70187097
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:69257015
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:66086784
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:73807636
      PKc_like; Protein Kinases, catalytic domain
    19. XM_039087220.1XP_038943148.1  obscurin isoform X11

      Conserved Domains (11) summary
      cd12025
      Location:67776839
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:87118789
      FN3; Fibronectin type 3 domain
      cd00063
      Location:56595744
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:70577181
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:72827361
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:71897279
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:68727048
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:76447900
      PKc_like; Protein Kinases, catalytic domain
    20. XM_039087219.1XP_038943147.1  obscurin isoform X3

      Conserved Domains (11) summary
      cd12025
      Location:68656927
      SH3_Obscurin_like; Src homology 3 domain of Obscurin and similar proteins
      smart00060
      Location:87998877
      FN3; Fibronectin type 3 domain
      cd00063
      Location:57475832
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd13239
      Location:71457269
      PH_Obscurin; Obscurin pleckstrin homology (PH) domain
      pfam07679
      Location:998
      I-set; Immunoglobulin I-set domain
      pfam13927
      Location:73707449
      Ig_3; Immunoglobulin domain
      cd00096
      Location:984986
      Ig; Ig strand A [structural motif]
      cd20971
      Location:72777367
      IgI_1_Titin-A168_like; First immunoglobulin-like domains A168 within the A-band segment of human cardiac titin, and similar domains; a member of the I-set of IgSF domains
      cl02571
      Location:69607136
      RhoGEF; Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
      cl11960
      Location:9841065
      Ig; Immunoglobulin domain
      cl21453
      Location:77327988
      PKc_like; Protein Kinases, catalytic domain
    21. XM_063270105.1XP_063126175.1  obscurin isoform X2

    22. XM_063270107.1XP_063126177.1  obscurin isoform X5

    23. XM_063270113.1XP_063126183.1  obscurin isoform X12

    24. XM_063270104.1XP_063126174.1  obscurin isoform X1

    25. XM_063270120.1XP_063126190.1  obscurin isoform X25

      UniProtKB/TrEMBL
      A0A0G2JUP3
    26. XM_063270119.1XP_063126189.1  obscurin isoform X25

      UniProtKB/TrEMBL
      A0A0G2JUP3
    27. XM_063270122.1XP_063126192.1  obscurin isoform X27

      UniProtKB/TrEMBL
      A0A0G2JUP3
    28. XM_063270121.1XP_063126191.1  obscurin isoform X26

      UniProtKB/TrEMBL
      A0A0G2JUP3