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    LOC102553820 uncharacterized LOC102553820 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102553820, updated on 29-Feb-2024

    Summary

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    Symbol
    LOC102553820provided by RGD
    Full Name
    uncharacterized LOC102553820provided by RGD
    Primary source
    RGD:7513176
    See related
    AllianceGenome:RGD:7513176
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 26.4) See more
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    Genomic context

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    See LOC102553820 in Genome Data Viewer
    Location:
    5q21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (40882292..40886116)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (36085588..36089407)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (36683978..36688937)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene F-box and leucine-rich repeat protein 4 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC120102845 Neighboring gene POU class 3 homeobox 2 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      40882292..40886116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005504675.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases