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    Tmem139 transmembrane protein 139 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680244, updated on 3-Apr-2024

    Summary

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    Symbol
    Tmem139provided by RGD
    Full Name
    transmembrane protein 139provided by RGD
    Primary source
    RGD:1594187
    See related
    Ensembl:ENSRNOG00000063089 AllianceGenome:RGD:1594187
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be integral component of membrane. Orthologous to human TMEM139 (transmembrane protein 139). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 120.3), Thymus (RPKM 11.2) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tmem139 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (72113437..72115786)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (71147072..71149151)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (71648705..71651861)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase kappa 1 Neighboring gene peroxiredoxin 1, pseudogene 1 Neighboring gene caspase 2 Neighboring gene small nucleolar RNA SNORD88 Neighboring gene chloride voltage-gated channel 1 Neighboring gene family with sequence similarity 131, member B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 139

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      72113437..72115786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286944.1 → XP_063143014.1  transmembrane protein 139

      UniProtKB/TrEMBL
      A0A8I6AMU2

    2. XM_063286943.1 → XP_063143013.1  transmembrane protein 139

      UniProtKB/TrEMBL
      A0A8I6AMU2

    3. XM_006236395.5 → XP_006236457.1  transmembrane protein 139

      See identical proteins and their annotated locations for XP_006236457.1

      UniProtKB/TrEMBL
      A0A8I6AMU2
      Related
      ENSRNOP00000096921.1
      Conserved Domains (1) summary
      pfam15345
      Location:67 → 194
      TMEM51; Transmembrane protein 51
    Nucleotide Protein Strain
    Heading Accession and Version

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