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    Ccdc12 coiled-coil domain containing 12 [ Mus musculus (house mouse) ]

    Gene ID: 72654, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ccdc12provided by MGI
    Official Full Name
    coiled-coil domain containing 12provided by MGI
    Primary source
    MGI:MGI:1919904
    See related
    Ensembl:ENSMUSG00000019659 AllianceGenome:MGI:1919904
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2700094L05Rik
    Summary
    Predicted to be part of U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human CCDC12 (coiled-coil domain containing 12). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 43.2), bladder adult (RPKM 32.1) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc12 in Genome Data Viewer
    Location:
    9 60.37 cM; 9 F2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (110483376..110540661)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (110654308..110711593)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25267 Neighboring gene neurotrophin receptor associated death domain Neighboring gene neurobeachin-like 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:110547743-110548020 Neighboring gene microRNA 8107 Neighboring gene STARR-positive B cell enhancer ABC_E2308 Neighboring gene STARR-positive B cell enhancer ABC_E8949 Neighboring gene predicted gene, 35715 Neighboring gene parathyroid hormone 1 receptor Neighboring gene predicted gene, 35775 Neighboring gene myosin, light polypeptide 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
    2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    4. ATG5 is required for B cell polarization and presentation of particulate antigens. Arbogast F, et al. Autophagy, 2019 Feb. PMID 30196744, Free PMC Article
    5. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    part_of U2-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of post-mRNA release spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028312.3 → NP_082588.2  coiled-coil domain-containing protein 12

      See identical proteins and their annotated locations for NP_082588.2

      Status: VALIDATED

      Source sequence(s)
      AK012610, BE627582, CA450868
      Consensus CDS
      CCDS23570.1
      UniProtKB/Swiss-Prot
      Q8R344, Q9CZH5
      Related
      ENSMUSP00000019803.5, ENSMUST00000019803.9
      Conserved Domains (1) summary
      pfam08315
      Location:11 → 143
      cwf18; cwf18 pre-mRNA splicing factor

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      110483376..110540661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030244635.1 → XP_030100495.1  coiled-coil domain-containing protein 12 isoform X1

      UniProtKB/Swiss-Prot
      Q8R344, Q9CZH5
      Conserved Domains (1) summary
      pfam08315
      Location:11 → 143
      cwf18; cwf18 pre-mRNA splicing factor

    2. XM_030244636.1 → XP_030100496.1  coiled-coil domain-containing protein 12 isoform X1

      UniProtKB/Swiss-Prot
      Q8R344, Q9CZH5
      Conserved Domains (1) summary
      pfam08315
      Location:11 → 143
      cwf18; cwf18 pre-mRNA splicing factor
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R344.2 GenPept UniProtKB/Swiss-Prot:Q8R344

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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