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    Gm5142 predicted gene 5142 [ Mus musculus (house mouse) ]

    Gene ID: 380907, updated on 8-Feb-2024

    Summary

    Official Symbol
    Gm5142provided by MGI
    Official Full Name
    predicted gene 5142provided by MGI
    Primary source
    MGI:MGI:3647352
    See related
    Ensembl:ENSMUSG00000053868 AllianceGenome:MGI:3647352
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG380907
    Expression
    Restricted expression toward testis adult (RPKM 241.7) See more
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    Genomic context

    See Gm5142 in Genome Data Viewer
    Location:
    14 C3; 14 31.35 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (59395952..59416198, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (59158503..59178749, complement)

    Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_36834 Neighboring gene predicted gene, 41162 Neighboring gene STARR-seq mESC enhancer starr_36835 Neighboring gene RIKEN cDNA 1700129C05 gene Neighboring gene STARR-seq mESC enhancer starr_36836 Neighboring gene STARR-seq mESC enhancer starr_36837 Neighboring gene regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1 Neighboring gene PHD finger protein 11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC380907

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004158.2NP_001004158.1  uncharacterized protein LOC380907

      See identical proteins and their annotated locations for NP_001004158.1

      Status: PREDICTED

      Source sequence(s)
      AK076969
      Consensus CDS
      CCDS27167.1
      UniProtKB/TrEMBL
      Q8C5X9
      Related
      ENSMUST00000224214.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000080.7 Reference GRCm39 C57BL/6J

      Range
      59395952..59416198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)