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    AT5G61880 Protein Transporter, Pam16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836309, updated on 15-Oct-2023

    Summary

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    Gene symbol
    AT5G61880
    Gene description
    Protein Transporter, Pam16
    Primary source
    Araport:AT5G61880
    Locus tag
    AT5G61880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPAM16L; MAC9.20; MAC9_20; PAM16L
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    Genomic context

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    See AT5G61880 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24850211..24851803)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene floral meristem identity control protein LEAFY (LFY) Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene Calcium-dependent phospholipid-binding Copine family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex. Tamadaddi C, et al. Plant Mol Biol, 2021 Mar. PMID 33206359
    2. Mitochondrial AtPAM16 is required for plant survival and the negative regulation of plant immunity. Huang Y, et al. Nat Commun, 2013. PMID 24153405
    3. Presequence translocase-associated motor subunits of the mitochondrial protein import apparatus are dual-targeted to mitochondria and plastids. Gill-Hille M, et al. Front Plant Sci, 2022. PMID 36438081, Free PMC Article
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex.
      Title: Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex.
    2. AtPAM16 seems to be involved in mitochondria-mediated plant immunity thus protecting plants from over-accumulation of reactive oxygen species and preventing autoimmunity.
      Title: Mitochondrial AtPAM16 is required for plant survival and the negative regulation of plant immunity.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_125581.2
    NM_180912.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of defense response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein import into mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of TIM23 mitochondrial import inner membrane translocase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial inner membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein Transporter, Pam16
    NP_568943.1
    • Protein Transporter, Pam16; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: Protein Transporter, Pam16 (TAIR:AT3G59280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_851243.1
    • Protein Transporter, Pam16; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: Protein Transporter, Pam16 (TAIR:AT3G59280.1); Has 384 Blast hits to 384 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 124; Plants - 79; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24850211..24851803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345501.1 → NP_001331745.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEU0, A0A654GDL8
      Conserved Domains (1) summary
      cl02542
      Location:1 → 91
      DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...

    2. NM_180912.3 → NP_851243.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851243.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93W66, Q9FLS3
      UniProtKB/TrEMBL
      A0A178UE84
      Conserved Domains (1) summary
      cl02542
      Location:1 → 102
      DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...

    3. NM_125581.2 → NP_568943.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568943.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q93W66, Q9FLS3
      UniProtKB/TrEMBL
      A0A178UE84
      Conserved Domains (1) summary
      cl02542
      Location:1 → 102
      DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93W66.1

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