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    PPAN PETER PAN-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836299, updated on 6-Oct-2023

    Summary

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    Gene symbol
    PPAN
    Gene description
    PETER PAN-like protein
    Primary source
    Araport:AT5G61770
    Locus tag
    AT5G61770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MAC9.8; MAC9_8; PETER PAN-like protein
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    Genomic context

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    See PPAN in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (24815541..24817728)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene inositol polyphosphate kinase 2 beta Neighboring gene TUDOR-SN protein 2 Neighboring gene calnexin 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNAIL1 is essential for female gametogenesis in Arabidopsis thaliana. Hao L, et al. J Integr Plant Biol, 2017 Sep. PMID 28776932
    2. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_125571.5
    NM_180911.2
    NM_203247.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within translation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PETER PAN-like protein
    NP_568939.2
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1471 Blast hits to 1151 proteins in 223 species: Archae - 0; Bacteria - 34; Metazoa - 730; Fungi - 196; Plants - 73; Viruses - 37; Other Eukaryotes - 401 (source: NCBI BLink).
    NP_851242.1
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
    NP_974976.1
    • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24815541..24817728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125571.5 → NP_568939.2  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568939.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6, F4K3M1
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain

    2. NM_180911.2 → NP_851242.1  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851242.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ASU7, Q9FLT1
      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain

    3. NM_203247.1 → NP_974976.1  PETER PAN-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974976.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178US73, A0A5S9YHB6, F4K3M1
      Conserved Domains (1) summary
      pfam04427
      Location:48 → 288
      Brix; Brix domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ASU7.1

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