Fer1l4 fer-1-like family member 4 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Fer1l4provided by RGD
Full Name: fer-1-like family member 4provided by RGD
Primary source: RGD:1308250
See related: Ensembl:ENSRNOG00000019467 AllianceGenome:RGD:1308250
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable metal ion binding activity. Predicted to be involved in plasma membrane organization. Predicted to be integral component of membrane. Orthologous to human FER1L4 (fer-1 like family member 4 (pseudogene)). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Kidney (RPKM 1.3), Thymus (RPKM 1.2) and 9 other tissues See more
Orthologs: mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 3q42

Exon count:: 45

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (164996183..165031719, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (144536099..144571634, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (151564604..151600140, complement)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in plasma membrane organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: fer-1-like protein 4

Names: fer-1-like 4; fer-1-like protein 4-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001106534.2 → NP_001100004.2 fer-1-like protein 4

Status: PROVISIONAL

Source sequence(s)

JAXUCZ010000003

UniProtKB/TrEMBL

D4ABP2

Related

ENSRNOP00000026451.5, ENSRNOT00000026451.6

Conserved Domains (9) summary

cd04011
Location:224 → 334

C2B_Ferlin; C2 domain second repeat in Ferlin

cd04017
Location:966 → 1100

C2D_Ferlin; C2 domain fourth repeat in Ferlin

cd04018
Location:390 → 539

C2C_Ferlin; C2 domain third repeat in Ferlin

cd04037
Location:1449 → 1572

C2E_Ferlin; C2 domain fifth repeat in Ferlin

cd08373
Location:3 → 129

C2A_Ferlin; C2 domain first repeat in Ferlin

cd08374
Location:1692 → 1825

C2F_Ferlin; C2 domain sixth repeat in Ferlin

pfam08150
Location:861 → 930

FerB; FerB (NUC096) domain

pfam08151
Location:332 → 382

FerI; FerI (NUC094) domain

pfam16165
Location:1834 → 1985

Ferlin_C; Ferlin C-terminus