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    Fam229b family with sequence similarity 229, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100188933, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Fam229bprovided by RGD
    Official Full Name
    family with sequence similarity 229, member Bprovided by RGD
    Primary source
    RGD:2300149
    See related
    Ensembl:ENSRNOG00000024918 AllianceGenome:RGD:2300149
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human FAM229B (family with sequence similarity 229 member B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward (RPKM 5613.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fam229b in Genome Data Viewer
    Location:
    20q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (44093492..44106871, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (42538853..42552355, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (44207463..44220777, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene laminin subunit alpha 4 Neighboring gene M-phase phosphoprotein 6-like Neighboring gene uncharacterized LOC120098941 Neighboring gene tubulin, epsilon 1 Neighboring gene cellular communication network factor 6 Neighboring gene uncharacterized LOC108349081

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC188102

    General protein information

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    Preferred Names
    protein FAM229B
    Names
    UPF0731 protein C6orf225 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134695.1 → NP_001128167.1  protein FAM229B

      See identical proteins and their annotated locations for NP_001128167.1

      Status: VALIDATED

      Source sequence(s)
      BC158777
      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1
      Related
      ENSRNOP00000038054.2, ENSRNOT00000036853.3
      Conserved Domains (1) summary
      pfam14982
      Location:3 → 80
      UPF0731; UPF0731 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      44093492..44106871 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098356.2 → XP_038954284.1  protein FAM229B isoform X1

      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1
      Conserved Domains (1) summary
      pfam14982
      Location:3 → 80
      UPF0731; UPF0731 family

    2. XM_063278906.1 → XP_063134976.1  protein FAM229B isoform X1

      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1

    3. XM_039098352.2 → XP_038954280.1  protein FAM229B isoform X1

      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1
      Conserved Domains (1) summary
      pfam14982
      Location:3 → 80
      UPF0731; UPF0731 family

    4. XM_063278905.1 → XP_063134975.1  protein FAM229B isoform X1

      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1

    5. XM_063278904.1 → XP_063134974.1  protein FAM229B isoform X1

      UniProtKB/Swiss-Prot
      B0BND4
      UniProtKB/TrEMBL
      A6KIF1

    6. XM_063278907.1 → XP_063134977.1  protein FAM229B isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B0BND4.1 GenPept UniProtKB/Swiss-Prot:B0BND4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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