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    SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 711134, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SMARCC1provided by VGNC
    Official Full Name
    SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1provided by VGNC
    Primary source
    VGNC:VGNC:84075
    See related
    Ensembl:ENSMMUG00000009345
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See SMARCC1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 2 NC_041755.1 (103600078..103793519, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 2 NC_027894.1 (94730907..94928213)

    Chromosome 2 - NC_041755.1Genomic Context describing neighboring genes Neighboring gene bolA-like protein 2 pseudogene Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene chondroitin sulfate proteoglycan 5 Neighboring gene DExH-box helicase 30 Neighboring gene uncharacterized LOC114676343 Neighboring gene microRNA mir-1226 Neighboring gene microtubule associated protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of npBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SWI/SNF complex subunit SMARCC1
    Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041755.1 Reference Mmul_10 Primary Assembly

      Range
      103600078..103793519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028844071.1 → XP_028699904.1  SWI/SNF complex subunit SMARCC1 isoform X2

      UniProtKB/TrEMBL
      A0A5F8A5U9
      Related
      ENSMMUP00000073315.1, ENSMMUT00000094659.1
      Conserved Domains (4) summary
      COG5259
      Location:444 → 710
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16496
      Location:32 → 445
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:706 → 770
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
      pfam16495
      Location:883 → 954
      SWIRM-assoc_1; SWIRM-associated region 1

    2. XM_015131071.2 → XP_014986557.1  SWI/SNF complex subunit SMARCC1 isoform X1

      UniProtKB/TrEMBL
      F7HJJ3, H9F8X2
      Related
      ENSMMUP00000012239.3, ENSMMUT00000013058.4
      Conserved Domains (4) summary
      COG5259
      Location:444 → 710
      RSC8; RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
      pfam16495
      Location:883 → 954
      SWIRM-assoc_1; SWIRM-associated region 1
      pfam16496
      Location:35 → 445
      SWIRM-assoc_2; SWIRM-associated domain at the N-terminal
      pfam16498
      Location:706 → 770
      SWIRM-assoc_3; SWIRM-associated domain at the C-terminal
    Nucleotide Protein
    Heading Accession and Version

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