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    VPS53 VPS53 subunit of GARP complex [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 699470, updated on 5-Mar-2024

    Summary

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    Official Symbol
    VPS53provided by VGNC
    Official Full Name
    VPS53 subunit of GARP complexprovided by VGNC
    Primary source
    VGNC:VGNC:79522
    See related
    Ensembl:ENSMMUG00000003042
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS53 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (407663..585877, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (397527..578252, complement)

    Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene ligand of ATE1 Neighboring gene refilin B Neighboring gene uncharacterized LOC100424597 Neighboring gene uncharacterized LOC114673029 Neighboring gene 40S ribosomal protein S4, X isoform-like Neighboring gene TLC domain containing 3A Neighboring gene gem nuclear organelle associated protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of GARP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 53 homolog
    Names
    VPS53, GARP complex subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041769.1 Reference Mmul_10 Primary Assembly

      Range
      407663..585877 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_028835832.1 → XP_028691665.1  vacuolar protein sorting-associated protein 53 homolog isoform X3

      UniProtKB/TrEMBL
      A0A1D5R5D8
      Related
      ENSMMUP00000055525.2, ENSMMUT00000066613.2
      Conserved Domains (1) summary
      pfam04100
      Location:29 → 444
      Vps53_N; Vps53-like, N-terminal

    2. XM_028835834.1 → XP_028691667.1  vacuolar protein sorting-associated protein 53 homolog isoform X5

      UniProtKB/TrEMBL
      G7NHJ7
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 424
      Vps53_N; Vps53-like, N-terminal

    3. XM_028835833.1 → XP_028691666.1  vacuolar protein sorting-associated protein 53 homolog isoform X4

      UniProtKB/TrEMBL
      H9FWP0
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 425
      Vps53_N; Vps53-like, N-terminal

    4. XM_028835831.1 → XP_028691664.1  vacuolar protein sorting-associated protein 53 homolog isoform X2

      UniProtKB/TrEMBL
      G7NHJ7, I2CTH9
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 453
      Vps53_N; Vps53-like, N-terminal

    5. XM_028835830.1 → XP_028691663.1  vacuolar protein sorting-associated protein 53 homolog isoform X1

      UniProtKB/TrEMBL
      F6VM32, H9FWP0
      Related
      ENSMMUP00000004055.4, ENSMMUT00000004301.4
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 454
      Vps53_N; Vps53-like, N-terminal

    6. XM_028835836.1 → XP_028691669.1  vacuolar protein sorting-associated protein 53 homolog isoform X6

      UniProtKB/TrEMBL
      H9FWP0
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 454
      Vps53_N; Vps53-like, N-terminal

    7. XM_028835837.1 → XP_028691670.1  vacuolar protein sorting-associated protein 53 homolog isoform X7

      UniProtKB/TrEMBL
      G7NHJ7
      Conserved Domains (1) summary
      pfam04100
      Location:39 → 424
      Vps53_N; Vps53-like, N-terminal
    Nucleotide Protein
    Heading Accession and Version

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