U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Spetex2l2 Spetex-2 protein like 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100360856, updated on 29-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Spetex2l2provided by RGD
    Official Full Name
    Spetex-2 protein like 2provided by RGD
    Primary source
    RGD:2321302
    See related
    Ensembl:ENSRNOG00000047581 AllianceGenome:RGD:2321302
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    AABR07066700.1
    Expression
    Biased expression in Adrenal (RPKM 513.7), Brain (RPKM 299.3) and 1 other tissue See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Spetex2l2 in Genome Data Viewer
    Location:
    9q11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (3183357..3253392)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (2907664..2916404, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (8624791..8632955, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480315 Neighboring gene poly(rC) binding protein 4, pseudogene 6 Neighboring gene coiled coil domain containing 88A like 1 Neighboring gene Spetex-2E protein like 10 Neighboring gene partner of Y14 and mago-like Neighboring gene uncharacterized LOC134480314

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein Spetex2l2
    Names
    rCG43589-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      3183357..3253392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084380.2 → XP_038940308.2  uncharacterized protein Spetex2l2 isoform X7

    2. XM_006244279.5 → XP_006244341.1  uncharacterized protein Spetex2l2 isoform X6

      UniProtKB/TrEMBL
      M0RCF8
      Conserved Domains (1) summary
      pfam04822
      Location:49 → 126
      Takusan; Takusan

    3. XM_063267820.1 → XP_063123890.1  uncharacterized protein Spetex2l2 isoform X4

    4. XM_039084378.2 → XP_038940306.1  uncharacterized protein Spetex2l2 isoform X2

      UniProtKB/TrEMBL
      M0R6S6, M0RCF8
      Related
      ENSRNOP00000065132.2
      Conserved Domains (1) summary
      pfam04822
      Location:59 → 139
      Takusan

    5. XM_063267821.1 → XP_063123891.1  uncharacterized protein Spetex2l2 isoform X5

    6. XM_063267819.1 → XP_063123889.1  uncharacterized protein Spetex2l2 isoform X3

    7. XM_063267818.1 → XP_063123888.1  uncharacterized protein Spetex2l2 isoform X1

    8. XM_063267823.1 → XP_063123893.1  uncharacterized protein Spetex2l2 isoform X9

    9. XM_063267822.1 → XP_063123892.1  uncharacterized protein Spetex2l2 isoform X8

    RNA

    1. XR_010054675.1 RNA Sequence

    2. XR_010054674.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Tools