U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Znrd1as1 ZNRD1 antisense RNA 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499401, updated on 30-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Znrd1as1provided by RGD
    Official Full Name
    ZNRD1 antisense RNA 1provided by RGD
    Primary source
    RGD:1564067
    See related
    Ensembl:ENSRNOG00000000778 AllianceGenome:RGD:1564067
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tcte4; Tctex4; Znrd1as; RGD1564067
    Expression
    Biased expression in Testes (RPKM 79.5), Adrenal (RPKM 42.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Znrd1as1 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (1593908..1600355, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (1568105..1595084, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (2082259..2088413, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene RT1 class I, locus M6, gene 1 Neighboring gene RT1 class I, locus M6, gene 2 Neighboring gene RNA polymerase I subunit H Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 11 Neighboring gene ring finger protein 39 Neighboring gene uncharacterized LOC102554813

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genomic sequence and comparative analysis of the rat major histocompatibility complex. Hurt P, et al. Genome Res, 2004 Apr. PMID 15060004, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    ZNRD1 antisense RNA 1
    Names
    t-complex testis-expressed 4
    t-complex-associated testis expressed 4

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395156.1 → NP_001382085.1  ZNRD1 antisense RNA 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      F1LQH1
      Conserved Domains (1) summary
      pfam17658
      Location:10 → 155
      DUF5520; Family of unknown function (DUF5520)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      1593908..1600355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008772699.4 → XP_008770921.1  ZNRD1 antisense RNA 1 isoform X2

      UniProtKB/TrEMBL
      F1LQH1
      Conserved Domains (1) summary
      pfam17658
      Location:10 → 155
      DUF5520; Family of unknown function (DUF5520)

    2. XM_006255877.5 → XP_006255939.1  ZNRD1 antisense RNA 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A0A7
      Related
      ENSRNOP00000085520.1

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001166303.1: Suppressed sequence

      Description
      NM_001166303.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools