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    1700003F12Rik RIKEN cDNA 1700003F12 gene [ Mus musculus (house mouse) ]

    Gene ID: 75480, updated on 30-Apr-2024

    Summary

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    Official Symbol
    1700003F12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700003F12 geneprovided by MGI
    Primary source
    MGI:MGI:1922730
    See related
    Ensembl:ENSMUSG00000038523 AllianceGenome:MGI:1922730
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in brain; ovary; spleen; testis; and thyroid gland. Orthologous to human C20orf144 (chromosome 20 open reading frame 144). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 391.0) See more
    Orthologs
    human all
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    Genomic context

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    See 1700003F12Rik in Genome Data Viewer
    Location:
    2 H1; 2 76.79 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (154390824..154391970)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (154548904..154550050)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1461 Neighboring gene STARR-seq mESC enhancer starr_06124 Neighboring gene predicted gene, 52564 Neighboring gene CBFA2/RUNX1 translocation partner 2 Neighboring gene STARR-seq mESC enhancer starr_06127 Neighboring gene zinc finger, FYVE domain containing 21 pseudogene Neighboring gene N-terminal EF-hand calcium binding protein 3 Neighboring gene actin-like 10 Neighboring gene STARR-positive B cell enhancer ABC_E816 Neighboring gene E2F transcription factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C20orf144 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029305.2 → NP_083581.1  uncharacterized protein C20orf144 homolog

      See identical proteins and their annotated locations for NP_083581.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ080431
      Consensus CDS
      CCDS16933.1
      UniProtKB/TrEMBL
      Q9DAQ3
      Related
      ENSMUSP00000035523.5, ENSMUST00000045116.11
      Conserved Domains (1) summary
      pfam15318
      Location:1 → 185
      Bclt; Putative Bcl-2 like protein of testis

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      154390824..154391970
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319305.3 → XP_017174794.1  uncharacterized protein C20orf144 homolog isoform X1

      UniProtKB/TrEMBL
      A2AKE5
      Related
      ENSMUSP00000105331.4, ENSMUST00000109709.4
      Conserved Domains (1) summary
      pfam15318
      Location:1 → 202
      Bclt; Putative Bcl-2 like protein of testis
    Nucleotide Protein Strain
    Heading Accession and Version

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